BENviewer is a brand-new online gene interaction network visualization server based on graph embedding models. With mature graph embedding algorithms applied on several interaction network databases, it provides human-friendly 2D visualization based on more than 2000 biological pathways, and these results present not only genes involved but also tightness of interactions in an intuitive way. As a unique visualization server introducing graph embedding application for the first time, it is expected to help researchers gain deeper insights into biological networks beyond generating results explainable by existing knowledge. Additionally, operation flow for users is simplified to greater extent in its current version; meanwhile URL optimization contributes to data acquisition in batch for further analysis. BENviewer is freely available at http://www.bmeonline.cn/BENviewer, besides it is open-sourced at https://github.com/SKLB-lab/BENviewer, http://benviewer.bmeonline.cn.

中文翻译：

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BENviewer：基于图嵌入模型的基因交互网络可视化服务器

BENviewer是一款基于图嵌入模型的全新在线基因交互网络可视化服务器。将成熟的图嵌入算法应用于多个交互网络数据库，提供基于 2000 多个生物通路的人性化二维可视化，这些结果不仅直观地展示了所涉及的基因，而且还直观地展示了交互的紧密性。作为首次引入图嵌入应用程序的独特可视化服务器，除了生成现有知识可解释的结果之外，它有望帮助研究人员更深入地了解生物网络。此外，在当前版本中，更大程度地简化了用户的操作流程；同时 URL 优化有助于批量获取数据以供进一步分析。BENviewer 在 http://www 上免费提供。