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Computational Models of Auxin-Driven Patterning in Shoots
Cold Spring Harbor Perspectives in Biology ( IF 7.2 ) Pub Date : 2022-03-01 , DOI: 10.1101/cshperspect.a040097
Mikolaj Cieslak 1 , Andrew Owens 1 , Przemyslaw Prusinkiewicz 1
Affiliation  

Auxin regulates many aspects of plant development and behavior, including the initiation of new outgrowth, patterning of vascular systems, control of branching, and responses to the environment. Computational models have complemented experimental studies of these processes. We review these models from two perspectives. First, we consider cellular and tissue-level models of interaction between auxin and its transporters in shoots. These models form a coherent body of results exploring different hypotheses pertinent to the patterning of new outgrowth and vascular strands. Second, we consider models operating at the level of plant organs and entire plants. We highlight techniques used to reduce the complexity of these models, which provide a path to capturing the essence of studied phenomena while running simulations efficiently.

中文翻译:

芽中生长素驱动模式的计算模型

生长素调节植物发育和行为的许多方面,包括新产物的启动、血管系统的模式、分枝的控制和对环境的反应。计算模型补充了这些过程的实验研究。我们从两个角度回顾这些模型。首先,我们考虑生长素及其在芽中的转运蛋白之间相互作用的细胞和组织水平模型。这些模型形成了一个连贯的结果体,探索了与新的生长和血管链的图案相关的不同假设。其次,我们考虑在植物器官和整个植物水平上运行的模型。我们重点介绍了用于降低这些模型复杂性的技术,这些技术提供了一条在有效运行模拟的同时捕捉所研究现象本质的途径。
更新日期:2022-03-01
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