A global view of standards for open image data formats and repositories,Nature Methods

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A global view of standards for open image data formats and repositories
Nature Methods ( IF 48.0 ) Pub Date : 2021-05-04 , DOI: 10.1038/s41592-021-01113-7
Jason R Swedlow ₁ , Pasi Kankaanpää _{2,

3} , Ugis Sarkans ₄ , Wojtek Goscinski ₅ , Graham Galloway ₆ , Leonel Malacrida ₇ , Ryan P Sullivan ₈ , Steffen Härtel ₉ , Claire M Brown ₁₀ , Christopher Wood ₁₁ , Antje Keppler ₁₂ , Federica Paina ₁₃ , Ben Loos ₁₃ , Sara Zullino _{14,

15} , Dario Livio Longo ₁₆ , Silvio Aime _{14,

15} , Shuichi Onami ₁₇

Affiliation

Divisions of Computational Biology and Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dundee, UK.
Turku BioImaging, Åbo Akademi University and University of Turku, Turku, Finland.
Euro-BioImaging ERIC, Turku, Finland.
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Cambridge, UK.
Monash eResearch Centre, Monash University, Melbourne, Victoria, Australia.
National Imaging Facility, The University of Queensland, Brisbane, Queensland, Australia.
Advanced Bioimaging Unit, Institut Pasteur Montevideo and Facultad de Medicina, Universidad de la República, Montevideo, Uruguay.
Microscopy Australia, The University of Sydney, Sydney, Australia.
National Center for Health Information Systems (CENS), Center for Medical Informatics and Telemedicine (CIMT), and Biomedical Neuroscience Institute (BNI), Faculty of Medicine, University of Chile, Santiago, Chile.
Advanced BioImaging Facility (ABIF), McGill University and Canada BioImaging, Montreal, Quebec, Canada.
Laboratorio Nacional de Microscopía Avanzada, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, México.
Euro-BioImaging Bio-Hub, European Molecular Biology Laboratory, Heidelberg, Germany.
Department of Physiological Sciences, Stellenbosch University, Stellenbosch, South Africa.
Molecular Imaging Center, Department of Molecular Biotechnology and Health Sciences, University of Torino, Torino, Italy.
Euro-BioImaging ERIC, Torino, Italy.
Institute of Biostructures and Bioimaging (IBB), National Research Council of Italy (CNR), Torino, Italy.
RIKEN Center for Biosystems Dynamics Research, Kobe, Japan.

Imaging technologies are used throughout the life and biomedical sciences to understand mechanisms in biology and diagnosis and therapy in animal and human medicine. We present criteria for globally applicable guidelines for open image data tools and resources for the rapidly developing fields of biological and biomedical imaging.

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