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Deep neural networks for improving physical accuracy of 2D and 3D multi-mineral segmentation of rock micro-CT images
Applied Soft Computing ( IF 8.7 ) Pub Date : 2021-02-16 , DOI: 10.1016/j.asoc.2021.107185
Ying Da Wang , Mehdi Shabaninejad , Ryan T. Armstrong , Peyman Mostaghimi

Segmentation of 3D micro-Computed Tomographic (μCT) images of rock samples is essential for further Digital Rock Physics (DRP) analysis, however, conventional methods such as thresholding and watershed segmentation are susceptible to user-bias. Deep Convolutional Neural Networks (CNNs) have produced accurate pixelwise semantic (multi-category) segmentation results with natural images and μCT rock images, however, physical accuracy is not well documented. The performance of 4 CNN architectures is tested for 2D and 3D cases in 10 configurations. Manually segmented μCT images of Mt. Simon Sandstone guided by QEMSCANs are treated as ground truth and used as training and validation data, with a high voxelwise accuracy (over 99%) achieved. Downstream analysis is used to validate physical accuracy. The topology of each mineral is measured, the pore space absolute permeability and single/mixed wetting multiphase flow is modelled with direct simulation. These physical measures show high variance, with models that achieve 95%+ in voxelwise accuracy possessing permeabilities and connectivities orders of magnitude off. A network architecture is introduced as a hybrid fusion of U-Net and ResNet, combining short and long skip connections in a Network-in-Network configuration, which overall outperforms U-Net and ResNet variants in some minerals, while outperforming SegNet in all minerals in voxelwise and physical accuracy measures. The network architecture and the dataset volume fractions influence accuracy trade-off since sparsely occurring minerals are over-segmented by lower accuracy networks such as SegNet at the expense of under-segmenting other minerals which can be alleviated with loss weighting. This is an especially important consideration when training a physically accurate model for segmentation.



中文翻译:

深度神经网络可提高岩石微型CT图像的2D和3D多矿物分割的物理精度

3D微型计算机断层扫描(μ岩石样品的CT图像对于进一步的数字岩石物理(DRP)分析至关重要,但是,诸如阈值化和分水岭分割之类的常规方法容易受到用户偏见的影响。深度卷积神经网络(CNN)使用自然图像生成了准确的像素级语义(多类别)分割结果,并且μ但是,CT岩石图像的物理精度还没有得到很好的证明。针对10种配置下的2D和3D情况,测试了4种CNN架构的性能。手动分段μ山的CT图像。由QEMSCAN指导的Simon Sandstone被视为基本事实,并用作训练和验证数据,具有很高的体素精度(超过99%)。下游分析用于验证物理准确性。测量每种矿物的拓扑结构,通过直接模拟对孔隙空间绝对渗透率和单/混合润湿多相流进行建模。这些物理量度显示出很高的方差,在体素方向上达到95%+的模型的磁导率和连通性相差几个数量级。引入了一种网络体系结构,将其作为U-Net和ResNet的混合融合,在网络中网络配置中组合了短跳和长跳连接,在某些矿产方面总体上优于U-Net和ResNet变体,同时在体素和物理准确性方面的表现优于所有矿物中的SegNet。网络架构和数据集的体积分数会影响精度的权衡,因为稀疏出现的矿物会被较低精度的网络(例如SegNet)过度分割,而其他部分矿物的分割不足,可以通过损失加权来缓解。当训练物理上精确的分割模型时,这是一个特别重要的考虑因素。

更新日期:2021-02-28
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