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dadi.CUDA: Accelerating Population Genetics Inference with Graphics Processing Units
Molecular Biology and Evolution ( IF 10.7 ) Pub Date : 2021-01-22 , DOI: 10.1093/molbev/msaa305
Ryan N Gutenkunst 1
Affiliation  

dadi is a popular but computationally intensive program for inferring models of demographic history and natural selection from population genetic data. I show that running dadi on a Graphics Processing Unit can dramatically speed computation compared to the CPU implementation, with minimal user burden. Motivated by this speed increase, I also extended dadi to four- and five-population models. This functionality is available in dadi version 2.1.0, https://bitbucket.org/gutenkunstlab/dadi/.

中文翻译:

dadi.CUDA:使用图形处理单元加速人口遗传学推断

dadi是一种流行但运算量大的程序,用于从人口遗传数据中推断人口统计历史和自然选择模型。我证明,与CPU实施相比,在图形处理单元上运行dadi可以显着加快计算速度,并且用户负担最少。由于速度的提高,我也将dadi扩展到了四人和五人模型。dadi版本2.1.0(https://bitbucket.org/gutenkunstlab/dadi/)中提供了此功能。
更新日期:2021-01-22
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