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Conformational Shannon Entropy of mRNA Structures from Force Spectroscopy Measurements Predicts the Efficiency of−1Programmed Ribosomal Frameshift Stimulation
Physical Review Letters ( IF 8.6 ) Pub Date : 2021-01-21 , DOI: 10.1103/physrevlett.126.038102 Matthew T. J. Halma , Dustin B. Ritchie , Michael T. Woodside
Physical Review Letters ( IF 8.6 ) Pub Date : 2021-01-21 , DOI: 10.1103/physrevlett.126.038102 Matthew T. J. Halma , Dustin B. Ritchie , Michael T. Woodside
programmed ribosomal frameshifting () is stimulated by structures in messenger RNA (mRNA), but the factors determining efficiency are unclear. We show that efficiency varies directly with the conformational heterogeneity of the stimulatory structure, quantified as the Shannon entropy of the state occupancy, for a panel of stimulatory structures with efficiencies from 2% to 80%. The correlation is force dependent and vanishes at forces above those applied by the ribosome. These results support the hypothesis that heterogeneous conformational dynamics are a key factor in stimulating .
中文翻译:
力光谱测量的mRNA结构的构象香农熵预测−1程控的核糖体移码刺激的效率
程序性核糖体移码()由信使RNA(mRNA)中的结构刺激,但决定因素 效率尚不清楚。我们证明对于一组效率为2%至80%的刺激结构,效率直接取决于刺激结构的构象异质性(量化为状态占用的香农熵)。相关性是受力依赖的,并且在高于核糖体所施加的力时消失。这些结果支持以下假设:异构构象动力学是刺激的关键因素。。
更新日期:2021-01-21
中文翻译:
力光谱测量的mRNA结构的构象香农熵预测−1程控的核糖体移码刺激的效率
程序性核糖体移码()由信使RNA(mRNA)中的结构刺激,但决定因素 效率尚不清楚。我们证明对于一组效率为2%至80%的刺激结构,效率直接取决于刺激结构的构象异质性(量化为状态占用的香农熵)。相关性是受力依赖的,并且在高于核糖体所施加的力时消失。这些结果支持以下假设:异构构象动力学是刺激的关键因素。。