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Spirosoma taeanense sp. nov., a radiation resistant bacterium isolated from a coastal sand dune
Antonie van Leeuwenhoek ( IF 2.6 ) Pub Date : 2021-01-15 , DOI: 10.1007/s10482-020-01508-0
Ji Hee Lee 1 , Jong-Hyun Jung 1, 2 , Min-Kyu Kim 1 , Han Na Choe 3 , Chi Nam Seong 4 , Sangyong Lim 1, 2
Affiliation  

An aerobic, Gram-negative, non-motile, non-spore-forming, rod-shaped, and pale yellow-colored bacterial strain, designated TS118T, was isolated from a sand sample obtained from a coastal sand dune after exposure to 3 kGy of gamma radiation. Phylogenetic analysis based on 16S rRNA gene sequences revealed that the isolate was a member of the genus Spirosoma and most closely related to Spirosoma metallicum PR1014kT (95.1% similarity). The genome of strain TS118T is constituted by one chromosome (5,691,492 bp) and one plasmid (28,440 bp) and has a G + C content of 52.7%. The genome contains 4641 protein coding sequences (CDSs), 38 tRNAs, and 11 rRNAs. The predominant fatty acids of strain TS118T were C16:1 ω5c, iso-C15:0, C16:0, summed feature 3 (C16:1 ω6c and/or C16:1 ω7c), and iso-C17:0 3-OH. The major polar lipids were phosphatidylethanolamine, an unidentified amino lipid and an unidentified aminophospholipid. The main respiratory quinone was menaquinone-7 (MK-7). The novel strain showed resistance to gamma radiation with a D10 value (i.e., the dose required to reduce the bacterial population by tenfold) of 4.3 kGy. Based on the phylogenetic, physiological, and chemotaxonomic characteristics, strain TS118T represents a novel species, for which the name Spirosoma taeanense sp. nov. is proposed. The type strain is TS118T (=KCTC 72898T =JCM 34024T).



中文翻译:

Spirosoma taeanense sp. 11 月,一种从沿海沙丘中分离出的抗辐射细菌

在暴露于 3 kGy 的沿海沙丘的沙样中分离出一种需氧、革兰氏阴性、不运动、不形成孢子、杆状和淡黄色的细菌菌株,命名为 TS118 T伽马辐射。基于 16S rRNA 基因序列的系统发育分析表明,该分离物是Spirosoma属的成员,与Spirosoma metalum PR1014k T最密切相关(95.1% 相似性)。TS118 T菌株的基因组由一条染色体 (5,691,492 bp) 和一个质粒 (28,440 bp) 组成,G + C 含量为 52.7%。基因组包含 4641 个蛋白质编码序列 (CDS)、38 个 tRNA 和 11 个 rRNA。菌株 TS118 T的主要脂肪酸是 C 16:1 ω 5 c、iso-C 15:0、C 16:0、总特征 3(C 16:1 ω 6 c和/或 C 16:1 ω 7 c)和 iso-C 17: 0 3-OH。主要的极性脂质是磷脂酰乙醇胺、一种未鉴定的氨基脂质和一种未鉴定的氨基磷脂。主要的呼吸醌是甲基萘醌-7 (MK-7)。新菌株显示出对伽马辐射的抗性,D 10值(即,将细菌数量减少十倍所需的剂量)为 4.3 kGy。根据系统发育、生理和化学分类学特征,菌株 TS118 T代表一个新物种,名称为Spirosoma taeanense sp。十一月 被提议。类型菌株是 TS118 T (=KCTC 72898 T = JCM 34024 T )。

更新日期:2021-01-15
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