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Assessment of genetic diversity among Iranian Aegilops triuncialis accessions using ISSR, SCoT, and CBDP markers
Journal of Genetic Engineering and Biotechnology Pub Date : 2021-01-11 , DOI: 10.1186/s43141-020-00107-w
Lavin Khodaee , Reza Azizinezhad , Ali Reza Etminan , Mahmoud Khosroshahi

Crop wild relatives (CWRs) are commonly used as a suitable genetic reservoir for plant breeding. They can be used for enhancing the tolerance of plant varieties to biotic and abiotic stresses. Studying the genetic diversity of related wheat species in Iran could be useful to improve different traits of bread wheat, since the country is one of the major centers of genetic diversity and distribution of Aegilops species. Therefore, the aim of the present study was to determine the relationship among 48 Aegilops triuncialis accessions using three DNA marker systems, including start codon targeted (SCoT), CAAT box-derived polymorphism (CBDP), and inter-simple sequence repeat (ISSR) markers. A total of 359 amplified DNA fragments were generated using 13 CBDP, 14 SCoT, and 16 ISSR primers that produced 96, 147, and 152 bands, respectively. The discriminating power of the three markers was assessed using polymorphism information content (PIC), marker index (MI), and resolving power (Rp). The mean values of PIC for ISSR, SCoT, and CBDP markers were 0.3, 0.26, and 0.34, respectively, indicating the efficiency of the three markers in detecting polymorphism among the studied accessions. ISSR markers had the highest values of MI, Rp, and polymorphism percentage as compared to SCoT and CBDP markers. Based on the Shannon index and heterozygosity values, genetic diversity in the Alborz population was more than in other populations. The accessions were classified into six, five, and five groups based on ISSR, SCoT, and CBDP using the UPGMA method. According to the results of cluster and PCoA analyses, the variation patterns corresponded with the geographical distribution of the Ae. triuncialis accessions. The three markers provided a comprehensive pattern of the genetic diversity among the Iranian Ae. triuncialis accessions. This information could allow for a future insight into wheat breeding programs.

中文翻译:

伊朗之间的遗传多样性研究三芒山羊草使用ISSR,苏格兰人和CBDP标记登记

作物野生近缘种(CWR)通常用作植物育种的合适遗传库。它们可用于增强植物品种对生物和非生物胁迫的耐受性。对伊朗相关小麦物种的遗传多样性进行研究可能有助于改善面包小麦的不同性状,因为该国是埃及伊蚊的遗传多样性和分布的主要中心之一。因此,本研究的目的是使用三种DNA标记系统(包括起始密码子靶向(SCoT),CAAT盒衍生多态性(CBDP)和简单序列间重复(ISSR))确定48个古埃及盾eg种之间的关系。标记。使用13个CBDP,14个SCoT和16个ISSR引物分别产生了359条扩增的DNA片段,分别产生96条,147条和152条条带。使用多态性信息含量(PIC),标记指数(MI)和分辨力(Rp)评估了这三种标记的区分能力。ISSR,SCoT和CBDP标记的PIC平均值分别为0.3、0.26和0.34,表明这三个标记在检测所研究种质中检测多态性的效率。与SCoT和CBDP标记相比,ISSR标记的MI,Rp和多态性百分比值最高。根据香农指数和杂合度值,阿尔伯兹种群的遗传多样性高于其他种群。使用UPGMA方法,根据ISSR,SCoT和CBDP将种质分为6、5和5组。根据聚类分析和PCoA分析结果,其变化规律与Ae的地理分布相对应。Triuncialis加入。这三个标记提供了伊朗伊蚊之间遗传多样性的全面模式。Triuncialis加入。这些信息可以为将来的小麦育种计划提供参考。
更新日期:2021-01-11
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