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APOD: accurate sequence-based predictor of disordered flexible linkers
Bioinformatics ( IF 5.8 ) Pub Date : 2020-12-29 , DOI: 10.1093/bioinformatics/btaa808
Zhenling Peng, Qian Xing, Lukasz Kurgan

Disordered flexible linkers (DFLs) are abundant and functionally important intrinsically disordered regions that connect protein domains and structural elements within domains and which facilitate disorder-based allosteric regulation. Although computational estimates suggest that thousands of proteins have DFLs, they were annotated experimentally in <200 proteins. This substantial annotation gap can be reduced with the help of accurate computational predictors. The sole predictor of DFLs, DFLpred, trade-off accuracy for shorter runtime by excluding relevant but computationally costly predictive inputs. Moreover, it relies on the local/window-based information while lacking to consider useful protein-level characteristics.

中文翻译:

APOD:无序柔性接头的基于序列的准确预测因子

无序的柔性接头(DFL)是大量且功能上很重要的内在无序区域,这些区域将蛋白质结构域和结构域内的结构元件连接起来,并促进基于疾病的变构调节。尽管计算估计表明成千上万的蛋白质具有DFL,但在实验中用<200种蛋白质对它们进行了注释。可以借助精确的计算预测变量来减少这种实质性的注释差距。DFL的唯一预测器DFLpred可以通过排除相关但计算成本高的预测输入来权衡精度,从而缩短运行时间。此外,它依赖于基于局部/窗口的信息,而又没有考虑有用的蛋白质水平特征。
更新日期:2020-12-31
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