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PDB‐tools web: A user‐friendly interface for the manipulation of PDB files
Proteins: Structure, Function, and Bioinformatics ( IF 2.9 ) Pub Date : 2020-10-27 , DOI: 10.1002/prot.26018
Brian Jiménez-García 1 , João M C Teixeira 2 , Mikael Trellet 1 , João P G L M Rodrigues 3 , Alexandre M J J Bonvin 1
Affiliation  

The Protein Data Bank (PDB) file format remains a popular format used and supported by many software to represent coordinates of macromolecular structures. It however suffers from drawbacks such as error‐prone manual editing. Because of that, various software toolkits have been developed to facilitate its editing and manipulation, but, to date, there is no online tool available for this purpose. Here we present PDB‐Tools Web, a flexible online service for manipulating PDB files. It offers a rich and user‐friendly graphical user interface that allows users to mix‐and‐match more than 40 individual tools from the pdb‐tools suite. Those can be combined in a few clicks to perform complex pipelines, which can be saved and uploaded. The resulting processed PDB files can be visualized online and downloaded. The web server is freely available at https://wenmr.science.uu.nl/pdbtools.

中文翻译:

PDB工具网络:用于操作PDB文件的用户友好界面

蛋白质数据库(PDB)文件格式仍然是一种流行的格式,许多软件使用并支持这些格式来表示大分子结构的坐标。但是,它存在诸如容易出错的手动编辑之类的缺点。因此,已经开发了各种软件工具包来简化其编辑和操作,但是迄今为止,尚没有可用于此目的的在线工具。在这里,我们介绍了PDB-Tools Web,这是一种用于处理PDB文件的灵活在线服务。它提供了丰富且用户友好的图形用户界面,使用户可以混合使用pdbtools中的40多种工具套房。只需单击几下即可将其组合起来以执行复杂的管道,可以将其保存和上传。生成的已处理PDB文件可以在线查看并下载。该Web服务器可从https://wenmr.science.uu.nl/pdbtools免费获得。
更新日期:2020-10-27
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