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PEPATAC: An optimized pipeline for ATAC-seq data analysis with serial alignments
bioRxiv - Genomics Pub Date : 2021-09-30 , DOI: 10.1101/2020.10.21.347054
Jason P. Smith , M. Ryan Corces , Jin Xu , Vincent P. Reuter , Howard Y. Chang , Nathan C. Sheffield

Motivation As chromatin accessibility data from ATAC-seq experiments continues to expand, there is continuing need for standardized analysis pipelines. Here, we present PEPATAC, an ATAC-seq pipeline that is easily applied to ATAC-seq projects of any size, from one-off experiments to large-scale sequencing projects.

中文翻译:

PEPATAC:具有串行比对的 ATAC-seq 数据分析的优化管道

动机随着来自 ATAC-seq 实验的染色质可及性数据不断扩大,对标准化分析流程的持续需求。在这里,我们展示了 PEPATAC,这是一种 ATAC-seq 管道,可轻松应用于任何规模的 ATAC-seq 项目,从一次性实验到大规模测序项目。
更新日期:2021-10-03
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