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The complete genome sequence of a divergent grapevine virus I isolate naturally infecting grapevine in Greece
Archives of Virology ( IF 2.7 ) Pub Date : 2020-10-06 , DOI: 10.1007/s00705-020-04762-9
L. Lotos , A. B. Ruiz-García , P. Panailidou , A. Olmos , N. I. Katis , V. I. Maliogka

A significant number of new members of the genus Vitivirus have been identified recently, mainly due to the advent of high-throughput sequencing (HTS). Grapevine virus I (GVI), which was identified in New Zealand in 2018, is one of these viruses. RNAseq HTS analysis of a Greek grapevine (cv. Daphnia), revealed the presence of a GVI-like isolate (D2-1/19). Sequence analysis confirmed the classification of D2-1/19 as GVI. However, both sequence and phylogenetic data exhibited high levels of variability between D2-1/19 and the previously characterized GVI isolates. This study provides the full-length sequence of a divergent GVI isolate, adding knowledge to the limited information available about this recently identified virus.



中文翻译:

我分离出希腊自然感染葡萄的多种葡萄病毒的完整基因组序列

最近,主要由于高通量测序(HTS)的出现,已经鉴定出大量的葡萄病毒属新成员。这些病毒之一是2018年在新西兰发现的I型葡萄病毒(GVI)。RNAseq HTS分析希腊葡萄(葡萄树水蚤),发现存在类似GVI的分离株(D2-1 / 19)。序列分析证实了D2-1 / 19为GVI的分类。但是,序列和系统发育数据在D2-1 / 19与先前鉴定的GVI分离株之间均表现出高水平的变异性。这项研究提供了不同的GVI分离株的全长序列,为有关这种最近鉴定出的病毒的有限信息增加了知识。

更新日期:2020-10-07
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