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Paenibacillus lycopersici sp. nov. and Paenibacillus rhizovicinus sp. nov., isolated from the rhizosphere of tomato ( Solanum lycopersicum )
Journal of Microbiology ( IF 3 ) Pub Date : 2020-09-29 , DOI: 10.1007/s12275-020-0258-2
Shin Ae Lee 1 , Tae-Wan Kim 1 , Jun Heo 1 , Mee-Kyung Sang 1 , Jaekyeong Song 1 , Soon-Wo Kwon 1 , Hang-Yeon Weon 1
Affiliation  

Two Gram-stain-positive, rod-shaped, endospore-forming bacteria, designated 12200R-189T and 14171R-81T were isolated from the rhizosphere of tomato plants. The 16S rRNA gene sequence similarity between strains 12200R-189T and 14171R-81T were 97.2%. Both strains showed the highest 16S rRNA gene sequence similarities to Paenibacillus sacheonensis SY01T (96.3% and 98.0%, respectively). The genome of strain 12200R-189T was approximately 6.7 Mb in size with 5,750 protein-coding genes (CDSs) and the G + C content was 58.1 mol%, whereas that of strain 14171R-81T comprised one chromosome of 7.0 Mb and two plasmids (0.2 Mb each) with 6,595 CDSs and the G + C content was 54.5 mol%. Comparative genome analysis revealed that average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values among 12200R-189T, 14171R-81T, and other closely related species were below the cut-off levels 95% and 70%, respectively. Strain 12200R-189T grew at a temperature range of 15–40°C, pH 6.0–9.0, and 0–3% NaCl (w/v), whereas strain 14171R-81T grew at a temperature range of 10–37°C, pH 6.0–8.0, and 0–1% NaCl (w/v). Menaquinone-7 (MK-7) was the only isoprenoid quinone detected in both strains. The predominant cellular fatty acids (> 10%) were iso-C15:0, anteiso-C15:0, and iso-C16:0. The polar lipids of strain 12200R-189T were diphosphatidylglycerol (DPG), phosphatidylglycerol (PG), phosphatidylethanolamine (PE), aminophospholipid (APL), phospholipid (PL), phosphatidylglycolipid (PGL), and four aminophosphoglycolipids (APGLs) and those of strain 14171R-81T were DPG, PG, PE, APL, three PLs, two PGLs, and three APGLs. Based on phylogenetic, genomic, phenotypic, and chemotaxonomic analyses, strains 12200R-189T and 14171R-81T represent two novel species of the genus Paenibacillus, for which the names Paenibacillus lycopersici sp. nov. and Paenibacillus rhizovicinus sp. nov. are proposed. The type strains are 12200R-189T (= KACC 19916T = CCTCC AB 2020027T) and 14171R-81T (= KACC 19915T = CCTCC AB 2020026T).



中文翻译:

番茄类芽孢杆菌 十一月 和 Paenibacillus rhizovicinus sp。nov.,从番茄 (Solanum lycopersicum) 的根际分离

从番茄植物的根际分离出两种革兰氏染色阳性、棒状、内生孢子形成细菌,命名为 12200R-189 T和 14171R-81 T。菌株12200R-189 T和14171R-81 T之间的16S rRNA基因序列相似性为97.2%。两种菌株与Paenibacillus sacheonensis SY01 T的 16S rRNA 基因序列相似性最高(分别为 96.3% 和 98.0%)。菌株 12200R-189 T的基因组大小约为 6.7 Mb,具有 5,750 个蛋白质编码基因 (CDS),G + C 含量为 58.1 mol%,而菌株 14171R-81 T的基因组大小约为包含一个 7.0 Mb 的染色体和两个质粒(每个 0.2 Mb),含有 6,595 个 CDS,G + C 含量为 54.5 mol%。比较基因组分析显示,12200R-189 T、14171R-81 T和其他密切相关物种的平均核苷酸同一性 (ANI) 和数字 DNA-DNA 杂交 (dDDH) 值低于 95% 和 70% 的临界值,分别。菌株 12200R-189 T在 15–40°C、pH 6.0–9.0 和 0–3% NaCl (w/v) 的温度范围内生长,而菌株 14171R-81 T在 10–37° 的温度范围内生长C、pH 6.0–8.0 和 0–1% NaCl (w/v)。Menaquinone-7 (MK-7) 是在两种菌株中检测到的唯一异戊二烯醌。主要的细胞脂肪酸 (> 10%) 是 iso-C 15:0 , anteiso-C15:0和 iso-C 16:0。菌株12200R-189 T的极性脂质为双磷脂酰甘油(DPG)、磷脂酰甘油(PG)、磷脂酰乙醇胺(PE)、氨基磷脂(APL)、磷脂(PL)、磷脂酰糖脂(PGL)和四种氨基磷酸糖脂(APGLs)以及菌株的极性脂质。 14171R-81 T是 DPG、PG、PE、APL、三个 PL、两个 PGL 和三个 APGL。基于系统发育、基因组、表型和化学分类学分析,菌株 12200R-189 T和 14171R-81 T代表了类芽孢杆菌属的两个新物种,其名称为Paenibacillus lycopersici sp。十一月 和根际类芽孢杆菌sp。十一月 被提议。典型菌株是 12200R-189 T (= KACC 19916 T = CCTCC AB 2020027 T ) 和 14171R-81 T (= KACC 19915 T = CCTCC AB 2020026 T )。

更新日期:2020-09-29
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