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Bacillus rugosus sp. nov. producer of a diketopiperazine antimicrobial, isolated from marine sponge Spongia officinalis L.
Antonie van Leeuwenhoek ( IF 2.6 ) Pub Date : 2020-09-16 , DOI: 10.1007/s10482-020-01472-9
Dhruba Bhattacharya 1 , Sergio de Los Santos Villalobos 2 , Valeria Valenzuela Ruiz 2 , Joseph Selvin 3 , Joydeep Mukherjee 1
Affiliation  

A novel Gram-positive and endospore-forming bacterium assigned as strain SPB7T which is also a new source of a cyclic diketopiperazine (3S,6S)-3,6-diisobutylpiperazine-2,5-dione is described. A polyphasic (biochemical, phenotypic and genotypic) approach was used to clarify the taxonomic affiliation of this strain. The partial and complete 16S rRNA gene sequences revealed that strain SPB7T is a member of the Bacillus genus [showing high similarity (> 98.70%) with Bacillus spizizenii NRRL B-23049T, Bacillus tequilensis KCTC 13622T, Bacillus inaquosorum KCTC 13429T and Bacillus cabrialesii TE3T]. The maximum values for average nucleotide identity (ANI) and in silico DNA–DNA hybridization (GGDC, Formula 2) of strain SPB7T was obtained for twenty-five strains of Bacillus spizizenii (ANI 95.01–95.48% and GGDC 62.70–60.00%). The whole-genome phylogenetic relationship showed that SPB7T formed an individual and separated clade with the Bacillus spizizenii group. Principal cellular fatty acids identified in strain SPB7T were anteiso C15:0, anteiso C17:0, iso C15:0, iso C17:0, C16:0, C10:0 3OH and iso C17:1 ϖ10c. Polar lipid profile showed presence of diphosphotidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, two unknown phospholipids and five unknown lipids. Cells were rod shaped, catalase, oxidase-positive and motile. Growth occurred at 20–45 °C (optimal 35 °C), at pH 6.0–10.0 (optimal pH 8) and 0–10% (w/v) NaCl (optimal 2%). The phenotypic, biochemical, and genotypic traits of strain SPB7T strongly supported its taxonomic affiliation as a novel species of the Bacillus genus, for which the name Bacillus rugosus sp. nov. is proposed. The type strain is SPB7T (= NRRL B-65559T, = CICC 24827T, = MCC 4185T).



中文翻译:

皱纹芽孢杆菌 十一月 从海洋海绵Spongia officinalis L分离出的二酮哌嗪抗菌剂的生产商。

描述了一种新的革兰氏阳性和内生孢子细菌,命名为SPB7 T菌株,它也是环二酮哌嗪(3S,6S)-3,6-二异丁基哌嗪-2,5-二酮的新来源。多相(生化,表型和基因型)方法用于阐明该菌株的分类学隶属关系。在部分和完全的16S rRNA基因序列显示,应变SPB7 Ť是成员芽孢杆菌属[示出具有高的相似性(> 98.70%)芽孢杆菌小号pizizenii NRRL B-23049 Ť芽孢杆菌tequilensis KCTC 13622 Ť芽孢杆菌inaquosorum KCTC 13429 Ť芽孢杆菌TE3 T ]。对于平均核苷酸同一性(ANI)和在计算机芯片上的DNA-DNA杂交的最大值(GGDC,式2)应变SPB7的Ť是为25株获得的芽孢杆菌小号pizizenii(ANI 95.01-95.48%和GGDC 62.70-60.00% )。的全基因组的亲缘关系显示SPB7 Ť形成为与单独的和分离的进化枝芽孢杆菌小号pizizenii基。在应变SPB7鉴定主要细胞脂肪酸Ť分别为反异Ç 15:0,反异Ç 17:0,ISO C 15:0,ISO C 17:0,C16:0,C 10:0 3OH和iso C 17:1 ϖ10c。极性脂质谱显示存在二磷脂酰甘油,磷脂酰乙醇胺,磷脂酰甘油,两个未知的磷脂和五个未知的脂质。细胞为棒状,过氧化氢酶,氧化酶阳性和运动。生长在20–45°C(最佳35°C),pH 6.0–10.0(最佳pH 8)和0–10%(w / v)NaCl(最佳2%)下发生。SPB7 T菌株的表型,生化和基因型性状强烈支持其分类学隶属关系,是一种新的芽孢杆菌属,其名称为Bacillus rugosus sp。十一月 被提议。类型菌株为SPB7 T(= NRRL B-65559 T,= CICC 24827T,= MCC 4185 T)。

更新日期:2020-09-16
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