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Data-mining bioinformatics: suggesting Arabidopsis thaliana L-type lectin receptor kinase IX.2 (LecRK-IX.2) modulate metabolites and abiotic stress responses
Plant Signaling & Behavior ( IF 2.9 ) Pub Date : 2020-09-14 , DOI: 10.1080/15592324.2020.1818031
Raju Mondal 1 , Poushali Das 2
Affiliation  

ABSTRACT The central role of the Arabidopsis LecRK-IX.2 gene in response to biotic stress has been well established by an array of workers. So far, the role of LecRK-IX.2 in abiotic stresses has not been investigated systematically. Here, we have first investigated a comprehensive in silico survey to explore the regulation, expression pattern in responses to a wide range of abiotic stresses. The present study reveals that the LecRK-IX.2 promoter has numerous potential cis-regulatory elements (CREs) that are regulated by different stresses. AtGenExpress data elucidate that LecRK-IX.2 gene plays a potential role in responses to cold, osmotic, drought, salt, UV-B, heat, wound, and genotoxic compound. The expression profile of the co-expressed genes suggests that Arabidopsis LecRK-IX.2 gene might have a potential role in stress responses in a tissue-specific manner. Furthermore, a probable signal transduction mechanism has been described by using protein–protein interaction (PPI) dataset. Moreover, the present data-mining investigations have suggested that LecRK-IX.2 gene modulates cellular metabolites and abiotic stress responses.

中文翻译:

数据挖掘生物信息学:表明拟南芥 L 型凝集素受体激酶 IX.2 (LecRK-IX.2) 调节代谢物和非生物应激反应

摘要 拟南芥 LecRK-IX.2 基因在应对生物胁迫方面的核心作用已被一系列工作者充分证实。到目前为止,尚未系统地研究 LecRK-IX.2 在非生物胁迫中的作用。在这里,我们首先调查了一项全面的计算机调查,以探索对各种非生物胁迫响应的调节和表达模式。本研究表明 LecRK-IX.2 启动子具有许多受不同压力调节的潜在顺式调节元件 (CRE)。AtGenExpress 数据阐明 LecRK-IX.2 基因在对冷、渗透、干旱、盐、UV-B、热、伤口和基因毒性化合物的反应中发挥潜在作用。共表达基因的表达谱表明拟南芥 LecRK-IX。2 基因可能以组织特异性方式在应激反应中发挥潜在作用。此外,已经通过使用蛋白质 - 蛋白质相互作用(PPI)数据集描述了可能的信号转导机制。此外,目前的数据挖掘研究表明 LecRK-IX.2 基因调节细胞代谢物和非生物应激反应。
更新日期:2020-09-14
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