Department of Microbiology and Cell Biology, Indian Institute of Science, 560012 Bangalore, India.
NuMA is an abundant long coiled-coil protein that plays a prominent role in spindle organization during mitosis. In interphase, NuMA is localized to the nucleus and hypothesized to control gene expression and chromatin organization. However, because of the prominent mitotic phenotype upon NuMA loss, its precise function in the interphase nucleus remains elusive. Here, we report that NuMA is associated with chromatin in interphase and prophase but released upon nuclear envelope breakdown (NEBD) by the action of Cdk1. We uncover that NuMA directly interacts with DNA via evolutionarily conserved sequences in its C-terminus. Notably, the expression of the DNA-binding deficient mutant of NuMA affects chromatin decondensation at the mitotic exit, and nuclear shape in interphase. We show that the nuclear shape defects observed upon mutant NuMA expression are due to its potential to polymerize into higher-order fibrillar structures. Overall, this work establishes the spindle independent function of NuMA in choreographing proper chromatin decompaction and nuclear shape by directly associating with the DNA.
Movie S1: HeLa cells in prophase stably expressing mCherry-H2B and transiently transfected with GFP-NuMA(1411-2115) [Movie S1], GFP-NuMA(2058-2115) [Movie S2] or GFPNuMA(1411-2057) [Movie S3]. The GFP signal is in green, and the mCherry signal is in red. Time-lapse videos were acquired using a laser-scanning confocal microscope (Olympus FV 3000). Time is in minutes (min). Note that NuMA does not localize at chromatin at prophase in cells expressing GFP-NuMA(1411-2057).Download Original Video (.5 MB)https://ascb-prod-streaming.literatumonline.com/journals/content/mboc/0/mboc.ahead-of-print/mbc.e20-06-0415/20200824/media/mc-e20-06-0415-s02.,1200,900,652,642,.mp4.m3u8?b92b4ad1b4f274c70877518414abb28b3a1288f73c3055a5474bbf090edb6c3233559d1b16ff38c592a8e8e15ae303e79c682b0a95bc4fab8cf97b06cfef7c50cf0c1b69293f95cd7f96d691bf77af2af0552b359dbbcd94829a604f3df52d48f989fdb89cfe97ef5f8d2673f3a1e2a9a05445b1d659ac3ffd64bfa48191e0c5412698a5c56b8691caa79269409427ca6f5a1d5090610e1478eaeb8e8581546b0ee3e3c2b8dbc380f154Movie S2: HeLa cells in prophase stably expressing mCherry‐H2B and transiently transfected with GFP‐NuMA(1411‐2115) [Movie S1], GFP‐NuMA(2058‐2115) [Movie S2] or GFPNuMA(1411‐2057) [Movie S3]. The GFP signal is in green, and the mCherry signal is in red. Time‐lapse videos were acquired using a laser‐scanning confocal microscope (Olympus FV 3000). Time is in minutes (min). Note that NuMA does not localize at chromatin at prophase in cells expressing GFP‐NuMA(1411‐2057).Download Original Video (.6 MB)https://ascb-prod-streaming.literatumonline.com/journals/content/mboc/0/mboc.ahead-of-print/mbc.e20-06-0415/20200824/media/mc-e20-06-0415-s03.,1200,900,652,642,.mp4.m3u8?b92b4ad1b4f274c70877518414abb28b3a1288f73c3055a5474bbf090edb6c3233559d1b16ff38c592a8e8e15ae303e79c682b0a95bc4fab8cf97b06cfef7c50cf0c1b69293f95cd7f96d691bf77af2af0552b359dbbcd94829a604f3df52d48f989fdb89cfe97ef5f8d2673f3a1e2a9a05445b1d659ac3ffc64bfa48191e0c520a7159d1e6448e663198c11a84f4b88d296c2c1053c94400e76eda1942c141ee371248a429982ea2fefMovie S3: HeLa cells in prophase stably expressing mCherry‐H2B and transiently transfected with GFP‐NuMA(1411‐2115) [Movie S1], GFP‐NuMA(2058‐2115) [Movie S2] or GFPNuMA(1411‐2057) [Movie S3]. The GFP signal is in green, and the mCherry signal is in red. Time‐lapse videos were acquired using a laser‐scanning confocal microscope (Olympus FV 3000). Time is in minutes (min). Note that NuMA does not localize at chromatin at prophase in cells expressing GFP‐NuMA(1411‐2057).Download Original Video (.8 MB)https://ascb-prod-streaming.literatumonline.com/journals/content/mboc/0/mboc.ahead-of-print/mbc.e20-06-0415/20200824/media/mc-e20-06-0415-s04.,1200,900,652,642,.mp4.m3u8?b92b4ad1b4f274c70877518414abb28b3a1288f73c3055a5474bbf090edb6c3233559d1b16ff38c592a8e8e15ae303e79c682b0a95bc4fab8cf97b06cfef7c50cf0c1b69293f95cd7f96d691bf77af2af0552b359dbbcd94829a604f3df52d48f989fdb89cfe97ef5f8d2673f3a1e2a9a05445b1d659ac3ffb64bfa48191e0c5c86807790fc08a94fedfb22ee69466495683e0515647517de2ef8d8df027d68c9d31dd6b572db6e67953Movie S4: HeLa cells stably expressing mCherry‐H2B and depleted of endogenous NuMA by RNAi using siRNAs sequences targeting 3'UTR of NuMA. These cells are transiently transfected with AcGFP‐NuMA [Movie S4], AcGFP‐NuMA(1‐2057) [Movie S5], or AcGFPNuMA(1‐2115m) [Movie S6]. The GFP signal is shown in green, and the mCherry signal is in red. Time is in minutes (min). Time ‘0’ min being the last frame of metaphase before the onset of chromosomes segregation. Time‐lapse videos were acquired using a laser scanning confocal microscope (Olympus FV 3000).Download Original Video (.2 MB)https://ascb-prod-streaming.literatumonline.com/journals/content/mboc/0/mboc.ahead-of-print/mbc.e20-06-0415/20200824/media/mc-e20-06-0415-s05.,652,642,.mp4.m3u8?b92b4ad1b4f274c70877518515abb28bda92fbabe7b929571bd415190bf44d1790b7324fb90f184f91fab10e395327a1bef9725d0c99a358bbbe69c082a95f9d49957eb2932b2be9a6f328f5ec3ab3a0b97f9f37f515d02f189698ec17ae090a0b266d72db9d025ab59d0772192bd00077b2788348fb06cfa309ddc8d7e7bff68dd0dd4e243cea9ca7bacc0598c97e0e296bf887f84b03b57b0cf2fb2a69e5b3dcMovie S5: HeLa cells stably expressing mCherry‐H2B and depleted of endogenous NuMA by RNAi using siRNAs sequences targeting 3'UTR of NuMA. These cells are transiently transfected with AcGFP‐NuMA [Movie S4], AcGFP‐NuMA(1‐2057) [Movie S5], or AcGFPNuMA(1‐2115m) [Movie S6]. The GFP signal is shown in green, and the mCherry signal is in red. Time is in minutes (min). Time ‘0’ min being the last frame of metaphase before the onset of chromosomes segregation. Time‐lapse videos were acquired using a laser scanning confocal microscope (Olympus FV 3000).Download Original Video (.2 MB)https://ascb-prod-streaming.literatumonline.com/journals/content/mboc/0/mboc.ahead-of-print/mbc.e20-06-0415/20200824/media/mc-e20-06-0415-s06.,652,642,.mp4.m3u8?b92b4ad1b4f274c70877518515abb28bda92fbabe7b929571bd415190bf44d1790b7324fb90f184f91fab10e395327a1bef9725d0c99a358bbbe69c082a95f9d49957eb2932b2be9a6f328f5ec3ab3a0b97f9f37f515d02f189698ec17ae090a0b266d72db9d025ab59d0772192bd00077b2788348fb06cfa009ddc8d7e7bff65ac54f2ec12f3007082edc79dff201953bb72fbd92b677fe042978740a82264a71Movie S6: HeLa cells stably expressing mCherry‐H2B and depleted of endogenous NuMA by RNAi using siRNAs sequences targeting 3'UTR of NuMA. These cells are transiently transfected with AcGFP‐NuMA [Movie S4], AcGFP‐NuMA(1‐2057) [Movie S5], or AcGFPNuMA(1‐2115m) [Movie S6]. The GFP signal is shown in green, and the mCherry signal is in red. Time is in minutes (min). Time ‘0’ min being the last frame of metaphase before the onset of chromosomes segregation. Time‐lapse videos were acquired using a laser scanning confocal microscope (Olympus FV 3000).Download Original Video (.1 MB)https://ascb-prod-streaming.literatumonline.com/journals/content/mboc/0/mboc.ahead-of-print/mbc.e20-06-0415/20200824/media/mc-e20-06-0415-s07.,652,642,.mp4.m3u8?b92b4ad1b4f274c70877518515abb28bda92fbabe7b929571bd415190bf44d1790b7324fb90f184f91fab10e395327a1bef9725d0c99a358bbbe69c082a95f9d49957eb2932b2be9a6f328f5ec3ab3a0b97f9f37f515d02f189698ec17ae090a0b266d72db9d025ab59d0772192bd00077b2788348fb06cfa109ddc8d7e7bff62558c540b7aa34d82eacc7326723d7c5fcf78f2943a639f7a4d2cbaa722fb08349Movie S7: HeLa cells stably expressing mCherry‐H2B and transiently transfected with AcGFPNuMA [Movie S7] or AcGFP‐NuMA(1‐2057) [Movies S8‐S10]. The expression of AcGFP‐NuMA(1‐2057) leads to higher‐order assemblies within the nucleus. These assemblies are categorized into three groups: homogenous to puncta formation [Movie S8], homogenous to the solid fibrillar network [Movie S9], or puncta to the solid fibrillar network [Movie S10]. Time‐lapse videos were acquired using a laserscanning confocal microscope (Olympus FV 3000). Time is in hours (hr).Download Original Video (.6 MB)https://ascb-prod-streaming.literatumonline.com/journals/content/mboc/0/mboc.ahead-of-print/mbc.e20-06-0415/20200824/media/mc-e20-06-0415-s08.,652,642,.mp4.m3u8?b92b4ad1b4f274c70877518515abb28bda92fbabe7b929571bd415190bf44d1790b7324fb90f184f91fab10e395327a1bef9725d0c99a358bbbe69c082a95f9d49957eb2932b2be9a6f328f5ec3ab3a0b97f9f37f515d02f189698ec17ae090a0b266d72db9d025ab59d0772192bd00077b2788348fb06cfae09ddc8d7e7bff681c7fcd42aa5eccaa23593b4183a3d2b2bd97d795427c5f1bf23b11f4f54a2dcf2Movie S8: HeLa cells stably expressing mCherry‐H2B and transiently transfected with AcGFPNuMA [Movie S7] or AcGFP‐NuMA(1‐2057) [Movies S8‐S10]. The expression of AcGFP‐NuMA(1‐2057) leads to higher‐order assemblies within the nucleus. These assemblies are categorized into three groups: homogenous to puncta formation [Movie S8], homogenous to the solid fibrillar network [Movie S9], or puncta to the solid fibrillar network [Movie S10]. Time‐lapse videos were acquired using a laserscanning confocal microscope (Olympus FV 3000). Time is in hours (hr).Download Original Video (.3 MB)https://ascb-prod-streaming.literatumonline.com/journals/content/mboc/0/mboc.ahead-of-print/mbc.e20-06-0415/20200824/media/mc-e20-06-0415-s09.,652,642,.mp4.m3u8?b92b4ad1b4f274c70877518515abb28bda92fbabe7b929571bd415190bf44d1790b7324fb90f184f91fab10e395327a1bef9725d0c99a358bbbe69c082a95f9d49957eb2932b2be9a6f328f5ec3ab3a0b97f9f37f515d02f189698ec17ae090a0b266d72db9d025ab59d0772192bd00077b2788348fb06cfaf09ddc8d7e7bff6657d6729e0e57d9c5e052ebf490a8cb7663627a4f3204ed571252d881b97903ba9Movie S9: HeLa cells stably expressing mCherry‐H2B and transiently transfected with AcGFPNuMA [Movie S7] or AcGFP‐NuMA(1‐2057) [Movies S8‐S10]. The expression of AcGFP‐NuMA(1‐2057) leads to higher‐order assemblies within the nucleus. These assemblies are categorized into three groups: homogenous to puncta formation [Movie S8], homogenous to the solid fibrillar network [Movie S9], or puncta to the solid fibrillar network [Movie S10]. Time‐lapse videos were acquired using a laserscanning confocal microscope (Olympus FV 3000). Time is in hours (hr).Download Original Video (.5 MB)https://ascb-prod-streaming.literatumonline.com/journals/content/mboc/0/mboc.ahead-of-print/mbc.e20-06-0415/20200824/media/mc-e20-06-0415-s10.,652,642,.mp4.m3u8?b92b4ad1b4f274c70877518515abb28bda92fbabe7b929571bd415190bf44d1790b7324fb90f184f91fab10e395327a1bef9725d0c99a358bbbe69c082a95f9d49957eb2932b2be9a6f328f5ec3ab3a0b97f9f37f515d02f189698ec17ae090a0b266d72db9d025ab59d0772192bd00077b2788348fb06cef6cc46016c62109fd7ce68cc224610e4848b04291f0a60b7c349a9a713472319261d3d707f7a5b826bMovie S10: HeLa cells stably expressing mCherry‐H2B and transiently transfected with AcGFPNuMA [Movie S7] or AcGFP‐NuMA(1‐2057) [Movies S8‐S10]. The expression of AcGFP‐NuMA(1‐2057) leads to higher‐order assemblies within the nucleus. These assemblies are categorized into three groups: homogenous to puncta formation [Movie S8], homogenous to the solid fibrillar network [Movie S9], or puncta to the solid fibrillar network [Movie S10]. Time‐lapse videos were acquired using a laserscanning confocal microscope (Olympus FV 3000). Time is in hours (hr).Download Original Video (.8 MB)https://ascb-prod-streaming.literatumonline.com/journals/content/mboc/0/mboc.ahead-of-print/mbc.e20-06-0415/20200824/media/mc-e20-06-0415-s11.,652,642,.mp4.m3u8?b92b4ad1b4f274c70877518515abb28bda92fbabe7b929571bd415190bf44d1790b7324fb90f184f91fab10e395327a1bef9725d0c99a358bbbe69c082a95f9d49957eb2932b2be9a6f328f5ec3ab3a0b97f9f37f515d02f189698ec17ae090a0b266d72db9d025ab59d0772192bd00077b2788348fb06cef7cc46016c62109f0074072283bdabb38a8012196d36bc6b4173a98bbd32a771ab654aa2e5bfb0bc19Movie S11: HeLa Kyoto cells stably expressing mCherry‐LaminB1 and transiently transfected with AcGFP‐NuMA(1‐2057). The individual cells is imaged in such a way that the entire nucleus is covered with optical sectioning of 0.3 μm. Images were acquired using a laser‐scanning confocal microscope (Olympus FV 3000) and the entire z‐stack (61 images, covering a thickness of 20 μm) was utilized to make 3D‐movie on Imaris (Bitplane Inc.).Download Original Video (24.5 MB)https://ascb-prod-streaming.literatumonline.com/journals/content/mboc/0/mboc.ahead-of-print/mbc.e20-06-0415/20200824/media/mc-e20-06-0415-s12.,1920,1200,960,900,768,652,642,.mp4.m3u8?b92b4ad1b4f274c70877518b17abb28b8c6166875a97f369b6d543b680497f5bca01d1632f390ebb6e08bd2a2725a70a05738b03ddc7251bffb1206bcd384e738aacf0abe9b4502e102dfa92763a3cb1ed23a8389d9fc52551341a369b0edd299e7cf1bb58f8d40f7c0753f7e826d4ba324a79903ebe13506310a1b67f6802ea37f4e5e5ba91be3470b9347b19a7d81fda04640354a009cb5478c53d74183c7fd34729f2bbefed52344c1717839c67d7284c6f53a68e94