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NCBI Taxonomy: a comprehensive update on curation, resources and tools
Database: The Journal of Biological Databases and Curation ( IF 5.8 ) Pub Date : 2020-08-06 , DOI: 10.1093/database/baaa062
Conrad L Schoch 1 , Stacy Ciufo 1 , Mikhail Domrachev 1 , Carol L Hotton 1 , Sivakumar Kannan 1 , Rogneda Khovanskaya 1 , Detlef Leipe 1 , Richard Mcveigh 1 , Kathleen O’Neill 1 , Barbara Robbertse 1 , Shobha Sharma 1 , Vladimir Soussov 1 , John P Sullivan 1 , Lu Sun 1 , Seán Turner 1 , Ilene Karsch-Mizrachi 1
Affiliation  

The National Center for Biotechnology Information (NCBI) Taxonomy includes organism names and classifications for every sequence in the nucleotide and protein sequence databases of the International Nucleotide Sequence Database Collaboration. Since the last review of this resource in 2012, it has undergone several improvements. Most notable is the shift from a single SQL database to a series of linked databases tied to a framework of data called NameBank. This means that relations among data elements can be adjusted in more detail, resulting in expanded annotation of synonyms, the ability to flag names with specific nomenclatural properties, enhanced tracking of publications tied to names and improved annotation of scientific authorities and types. Additionally, practices utilized by NCBI Taxonomy curators specific to major taxonomic groups are described, terms peculiar to NCBI Taxonomy are explained, external resources are acknowledged and updates to tools and other resources are documented.

中文翻译:

NCBI分类法:关于策展,资源和工具的全面更新

美国国家生物技术信息中心(NCBI)分类法包括国际核苷酸序列数据库合作组织核苷酸和蛋白质序列数据库中每个序列的生物名称和分类。自2012年对该资源进行上次审核以来,它已进行了多项改进。最值得注意的是,从一个单一的SQL数据库到一系列与名为NameBank的数据框架相关联的链接数据库的转变。这意味着可以更详细地调整数据元素之间的关系,从而扩大同义词的标注范围,具有用特定命名特性标记名称的能力,增强对与名称相关的出版物的跟踪,并改进科学权威和类型的标注。另外,
更新日期:2020-08-20
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