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Comparison of visual and molecular taxonomic methods to identify ichthyoplankton in the North Sea
Limnology and Oceanography: Methods ( IF 2.7 ) Pub Date : 2020-08-16 , DOI: 10.1002/lom3.10387
Alejandro Mateos‐Rivera 1 , Rasmus Skern‐Mauritzen 1 , Geir Dahle 1 , Svein Sundby 1 , Bahar Mozfar 1 , Anders Thorsen 1 , Henning Wehde 1 , Bjørn A. Krafft 1
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The North Sea is an important spawning and nursery ground for many demersal and pelagic fishes whose spawning areas are largely overlapping in time and space. This makes ichthyoplankton visual identification from the various species particularly challenging. Despite historically intensive research in the area, detailed information on spawning sites and times for many taxa, are incomplete. To update and detail the mapping of fish spawning performance and distribution in the central and northern regions of the North Sea, the performance of a visual method and a molecular taxonomic approach used for taxonomic classification of ichthyoplankton was evaluated. Samples of fish eggs and larvae were collected regularly and in parallel at different latitudinal locations from the central to the northern North Sea, including a sample with 78 larvae used for direct comparison between both methods. A total of 5332 individuals were inspected and 36 different species were identified. The visual processing identified 89% of the collected larvae to species level, however, for the eggs the taxonomic resolution was lower with only 5% identified to species level. In comparison to visual identification, molecular barcoding gave higher precision of identification for larvae and especially for the eggs. For the larvae, 98% were assigned to species level, and for the eggs 94% were assigned to species level. We find that molecular barcoding is more effective and precise in taxonomic identification of both eggs and larvae to species level. However, visual identification is still needed to provide information on the developmental stages.

中文翻译:

视觉和分子分类学方法在北海中识别浮游鱼类的比较

北海是许多深海和远洋鱼类的重要产卵和育苗场,其产卵区域在时间和空间上有很大的重叠。这使得从各种物种的鱼鳞浮游生物的视觉识别尤其具有挑战性。尽管对该地区进行了深入的历史研究,但有关许多类群产卵地点和时间的详细信息仍不完整。为了更新和详细说明北海中部和北部地区鱼类产卵性能和分布图,对视觉方法和分子生物分类方法用于鱼鳞浮游生物分类进行了评估。从北海中部到北部,在不同纬度位置定期并平行采集鱼卵和幼虫的样本,包括一个带有78个幼虫的样本,用于两种方法之间的直接比较。总共检查了5332个人,并鉴定了36种不同的物种。视觉处理将收集到的幼虫中的89%鉴定为物种水平,但是,对于鸡蛋,分类学分辨率较低,只有5%鉴定为物种水平。与视觉识别相比,分子条形码对幼虫尤其是卵的识别具有更高的精确度。对于幼虫,将98%分配给物种级别,对于卵,将94%分配给物种级别。我们发现分子条形码在分类识别卵和幼虫到物种水平方面更有效和更精确。但是,仍然需要视觉识别以提供有关发育阶段的信息。总共检查了5332个人,并鉴定了36种不同的物种。视觉处理将收集到的幼虫中的89%鉴定为物种水平,但是,对于鸡蛋,分类学分辨率较低,只有5%鉴定为物种水平。与视觉识别相比,分子条形码对幼虫尤其是卵的识别具有更高的精确度。对于幼虫,将98%分配给物种级别,对于卵,将94%分配给物种级别。我们发现分子条形码在分类识别卵和幼虫到物种水平方面更有效和更精确。但是,仍然需要视觉识别以提供有关发育阶段的信息。总共检查了5332个人,并鉴定了36种不同的物种。视觉处理将收集到的幼虫中的89%鉴定为物种水平,但是,对于鸡蛋,分类学分辨率较低,只有5%鉴定为物种水平。与视觉识别相比,分子条形码对幼虫尤其是卵的识别具有更高的准确性。对于幼虫,将98%分配给物种级别,对于卵,将94%分配给物种级别。我们发现分子条形码在分类识别卵和幼虫到物种水平方面更有效和更精确。但是,仍然需要视觉识别以提供有关发育阶段的信息。视觉处理将收集到的幼虫中的89%鉴定为物种水平,但是,对于鸡蛋,分类学分辨率较低,只有5%鉴定为物种水平。与视觉识别相比,分子条形码对幼虫尤其是卵的识别具有更高的精确度。对于幼虫,将98%分配给物种级别,对于卵,将94%分配给物种级别。我们发现分子条形码在分类识别卵和幼虫到物种水平方面更有效和更精确。但是,仍然需要视觉识别以提供有关发育阶段的信息。视觉处理将收集到的幼虫中的89%鉴定为物种水平,但是,对于鸡蛋,分类学分辨率较低,只有5%鉴定为物种水平。与视觉识别相比,分子条形码对幼虫尤其是卵的识别具有更高的精确度。对于幼虫,将98%分配给物种级别,对于卵,将94%分配给物种级别。我们发现分子条形码在分类识别卵和幼虫到物种水平方面更有效和更精确。但是,仍然需要视觉识别以提供有关发育阶段的信息。分子条形码为幼虫尤其是卵的鉴定提供了更高的精度。对于幼虫,将98%分配给物种级别,对于卵,将94%分配给物种级别。我们发现分子条形码在分类识别卵和幼虫到物种水平方面更有效和精确。但是,仍然需要视觉识别以提供有关发育阶段的信息。分子条形码为幼虫特别是卵的鉴定提供了更高的精度。对于幼虫,将98%分配给物种级别,对于卵,将94%分配给物种级别。我们发现分子条形码在分类识别卵和幼虫到物种水平方面更有效和更精确。但是,仍然需要视觉识别以提供有关发育阶段的信息。
更新日期:2020-10-12
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