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rdmc: An Open Source R Package Implementing Convergent Adaptation Models of Lee and Coop (2017).
G3: Genes, Genomes, Genetics ( IF 2.6 ) Pub Date : 2020-09-01 , DOI: 10.1534/g3.120.401527
Silas Tittes 1
Affiliation  

The availability of whole genome sequencing data from multiple related populations creates opportunities to test sophisticated population genetic models of convergent adaptation. Recent work by Lee and Coop (2017) developed models to infer modes of convergent adaption at local genomic scales, providing a rich framework for assessing how selection has acted across multiple populations at the tested locus. Here I present, rdmc, an R package that builds on the existing software implementation of Lee and Coop (2017) that prioritizes ease of use, portability, and scalability. I demonstrate installation and comprehensive overview of the package’s current utilities.



中文翻译:

rdmc:实现Lee和Coop收敛融合模型的开源R包(2017)。

来自多个相关种群的全基因组测序数据的可用性创造了机会来测试融合适应的复杂种群遗传模型。最近的工作Lee and Coop(2017年)开发了模型以推断局部基因组尺度上的收敛适应模式,从而提供了一个丰富的框架来评估选择如何在被测基因座上跨多个种群起作用。在这里,我介绍了rdmc,它是一个R软件包,它基于的现有软件实现Lee and Coop(2017年)优先考虑易用性,可移植性和可伸缩性。我演示了该软件包当前实用程序的安装和全面概述。

更新日期:2020-09-02
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