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In vitro and in vivo characterization of genes involved in mannan degradation in Neurospora crassa.
Fungal Genetics and Biology ( IF 3 ) Pub Date : 2020-08-08 , DOI: 10.1016/j.fgb.2020.103441
Yunhan Hsu 1 , Manabu Arioka 2
Affiliation  

To better understand the roles of genes involved in mannan degradation in filamentous fungi, in this study we searched, identified, and characterized one putative GH5 endo-β-mannanase (GH5-7) and two putative GH2 mannan-degrading enzymes (GH2-1 and GH2-4) in Neurospora crassa. Real-time RT-PCR analyses showed that the expression levels of these genes were significantly up-regulated when the cells were grown in mannan-containing media where the induction level of gh5-7 was the highest. All three proteins were heterologously expressed and purified. GH5-7 displayed a substrate preference toward galactomannan by showing 10-times higher catalytic efficiency than to linear β-mannan. In contrast, GH2-1 preferred short manno-oligosaccharides or β-mannan as substrates. Compared to the wild type strain, the growth of Δgh5-7 and Δgh5-gh2-4 mutants, but not Δgh2-1, Δgh2-4, and Δgh2-gh2-4 mutants, was poor in the cultures containing glucomannan or galactomannan as the sole carbon source, suggesting that GH5-7 plays a critical role in the utilization of heteromannans in vivo. On the other hand, all the mutants showed significantly slow growth when grown in the medium containing linear β-mannan. Collectively, these results indicate that N. crassa can utilize glucomannan and galactomannan without GH2-1 and GH2-4, but efficient degradation of β-mannan requires a concerted action of three enzymes, GH5-7, GH2-1, and GH2-4.



中文翻译:

在粗糙脉孢菌中参与甘露聚糖降解的基因的体外和体内表征。

为了更好地了解参与丝状真菌中甘露聚糖降解的基因的作用,在本研究中,我们搜索、鉴定并表征了一种推定的 GH5 内切β-甘露聚糖酶 (GH5-7) 和两种推定的 GH2 甘露聚糖降解酶 (GH2-1和 GH2-4) 在粗糙脉孢菌中。实时 RT-PCR 分析表明,当细胞在含甘露聚糖的培养基中生长时,这些基因的表达水平显着上调,其中gh5-7的诱导水平是最高的。所有三种蛋白质均异源表达和纯化。GH5-7 显示出对半乳甘露聚糖的底物偏好,其催化效率是线性 β-甘露聚糖的 10 倍。相比之下,GH2-1 首选短甘露寡糖或 β-甘露聚糖作为底物。相比于野生型菌株,Δ的生长gh5-7和Δ gh5-gh2-4突变体,但不Δ gh2-1,Δ gh2-4,和Δ gh2-gh2-4突变体,是在差含有葡甘露聚糖或半乳甘露聚糖作为唯一碳源的培养物,表明 GH5-7在体内异甘露聚糖的利用中起关键作用. 另一方面,当在含有线性β-甘露聚糖的培养基中生长时,所有突变体都显示出显着缓慢的生长。总的来说,这些结果表明粗糙脉孢菌可以在没有 GH2-1 和 GH2-4 的情况下利用葡甘露聚糖和半乳甘露聚糖,但 β-甘露聚糖的有效降解需要三种酶 GH5-7、GH2-1 和 GH2-4 的协同作用.

更新日期:2020-08-15
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