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Radiomics analysis using stability selection supervised component analysis for right-censored survival data.
Computers in Biology and Medicine ( IF 7.7 ) Pub Date : 2020-08-06 , DOI: 10.1016/j.compbiomed.2020.103959
Kang K Yan 1 , Xiaofei Wang 2 , Wendy W T Lam 3 , Varut Vardhanabhuti 4 , Anne W M Lee 5 , Herbert H Pang 1
Affiliation  

Radiomics is a newly emerging field that involves the extraction of massive quantitative features from biomedical images by using data-characterization algorithms. Distinctive imaging features identified from biomedical images can be used for prognosis and therapeutic response prediction, and they can provide a noninvasive approach for personalized therapy. So far, many of the published radiomics studies utilize existing out of the box algorithms to identify the prognostic markers from biomedical images that are not specific to radiomics data. To better utilize biomedical images, we propose a novel machine learning approach, stability selection supervised principal component analysis (SSSuperPCA) that identifies stable features from radiomics big data coupled with dimension reduction for right-censored survival outcomes.

The proposed approach allows us to identify a set of stable features that are highly associated with the survival outcomes in a simple yet meaningful manner, while controlling the per-family error rate. We evaluate the performance of SSSuperPCA using simulations and real data sets for non-small cell lung cancer and head and neck cancer, and compare it with other machine learning algorithms.

The results demonstrate that our method has a competitive edge over other existing methods in identifying the prognostic markers from biomedical imaging data for the prediction of right-censored survival outcomes.



中文翻译:

使用稳定性选择监督成分分析进行右删失生存数据的放射组学分析。

放射组学是一个新兴领域,涉及使用数据表征算法从生物医学图像中提取大量定量特征。从生物医学图像中识别出的独特成像特征可用于预后和治疗反应预测,它们可以为个性化治疗提供一种无创的方法。到目前为止,许多已发表的放射组学研究利用现有的开箱即用算法从非放射组学数据的生物医学图像中识别预后标志物。为了更好地利用生物医学图像,我们提出了一种新的机器学习方法,即稳定性选择监督主成分分析 (SSSuperPCA),它从放射组学大数据中识别稳定特征,并结合降维以实现右删失生存结果。

所提出的方法使我们能够以简单而有意义的方式识别一组与生存结果高度相关的稳定特征,同时控制每个家庭的错误率。我们使用非小细胞肺癌和头颈癌的模拟和真实数据集评估 SSSuperPCA 的性能,并将其与其他机器学习算法进行比较。

结果表明,我们的方法在从生物医学成像数据中识别预后标志物以预测右删失生存结果方面比其他现有方法具有竞争优势。

更新日期:2020-08-06
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