当前位置: X-MOL 学术Syst. Appl. Microbiol. › 论文详情
Our official English website, www.x-mol.net, welcomes your feedback! (Note: you will need to create a separate account there.)
Rhizobium indicum sp. nov., isolated from root nodules of pea (Pisum sativum) cultivated in the Indian trans-Himalayas.
Systematic and Applied Microbiology ( IF 3.4 ) Pub Date : 2020-07-30 , DOI: 10.1016/j.syapm.2020.126127
Praveen Rahi 1 , Pranoti Giram 1 , Diptaraj Chaudhari 1 , George C diCenzo 2 , Shashi Kiran 3 , Aastha Khullar 1 , Mahima Chandel 1 , Sayali Gawari 1 , Anagha Mohan 1 , Shraddha Chavan 1 , Bhagyashree Mahajan 1
Affiliation  

Three strains of rhizobia isolated from effective root nodules of pea (Pisum sativum L.) collected from the Indian trans-Himalayas were characterized using 16S rRNA, atpD and recA genes. Phylogeny of the 16S rRNA genes revealed that the newly isolated strains were members of the genus Rhizobium with ≥99.9% sequence similarity to the members within the “Rhizobium leguminosarum” group. Phylogenetic analyses based on the concatenated sequences of atpD and recA gene, and 92 core genes extracted from the genome sequences indicated that strains JKLM 12A2T and JKLM 13E are grouped as a separate clade closely related to R. laguerreae FB206T. In contrast, the strain JKLM 19E was placed with “R. hidalgonense” FH14T. Whole-genome average nucleotide identity (ANI) values were 97.6% within strains JKLM 12A2T and JKLM 13E, and less than 94% with closely related species. The digital DNA-DNA hybridization (dDDH) values were 81.45 within the two strains and less than 54.8% to closely related species. The major cellular fatty acids were C18:1w7c in summed feature 8, C14:0 3OH/C16:1 iso I in summed feature 2, and C18:0. The DNA G + C content of JKLM 12A2T and JKLM 13E was 60.8 mol%. The data on genomic, chemotaxonomic, and phenotypic characteristics indicates that the strains JKLM 12A2T and JKLM 13E represent a novel species, Rhizobium indicum sp. nov. The type strain is JKLM 12A2T (= MCC 3961T = KACC 21380T = JCM 33658T). However, the strain JKLM 19E represents a member of “R. hidalgonense” and the symbiovar viciae.



中文翻译:

印度根瘤菌 十一月,与在印度跨喜马拉雅山种植的豌豆根瘤(Pisum sativum)分离。

使用16S rRNA,atpDrecA基因鉴定了从印度反喜马拉雅州收集的从豌豆(Pisum sativum L.)的有效根瘤中分离出的三株根瘤菌。16S rRNA基因的系统发育分析表明,新分离出的菌株是根瘤菌属的成员,与“根瘤菌”组中的成员具有≥99.9%的序列相似性。基于atpDrecA基因的串联序列以及从基因组序列中提取的92个核心基因的系统发育分析表明,菌株JKLM 12A2 T和JKLM 13E被分组为与R密切相关的单独进化枝laguerreae FB206牛逼。相反,将菌株JKLM 19E放置为“ R”hidalgonense ” FH14牛逼。JKLM 12A2 T和JKLM 13E菌株的全基因组平均核苷酸同一性(ANI)值为97.6%,而密切相关的物种则不到94%。在两个菌株中,数字DNA-DNA杂交(dDDH)值为81.45,与紧密相关的物种相比,小于54.8%。主要的细胞脂肪酸是特征8的C 18:1w7c,特征2 2的C 14:0 3OH / C 16:1 iso I和特征C 18:0。JKLM 12A2 T的DNA G + C含量JKLM 13E为60.8摩尔%。基因组,化学分类学和表型特征的数据表明,菌株JKLM 12A2 T和JKLM 13E代表了一种新种,印度根瘤菌。十一月 类型应变为JKLM 12A2 T(= MCC 3961 T  = KACC 21380 T  = JCM 33658 T)。但是,菌株JKLM 19E代表“ R ”的成员。hidalgonense ”和共生菌蚕豆

更新日期:2020-07-30
down
wechat
bug