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Avrilella dinanensis gen. nov., sp. nov., a novel bacterium of the family Flavobacteriaceae isolated from human blood.
Systematic and Applied Microbiology ( IF 3.4 ) Pub Date : 2020-07-18 , DOI: 10.1016/j.syapm.2020.126124
Caroline Leyer 1 , Mohamed Sassi 2 , Frédéric Gourmelen 3 , Agnès Burel 4 , Racha Beyrouthy 5 , Samer Kayal 1 , Richard Bonnet 5 , Vincent Cattoir 6
Affiliation  

Polyphasic taxonomic analysis was performed on a novel bacterium, designated UR159T, isolated in 2016 from human blood of a septic patient hospitalized in France. Preliminary 16S rRNA gene sequence-based phylogenetic analysis indicated that strain UR159T belonged to the family Flavobacteriaceae, forming a distinct phyletic line distantly related (<94% sequence similarity) to known species of the family. Further phenotypic, chemotaxonomic and genomic analyses were performed. Cells were non-motile, oxidase-negative, catalase-positive Gram-negative rods. It was strictly aerobic yielding yellow-pigmented colonies, and was metabolically rather inert. Major fatty acids were iso-branched fatty acids, predominantly iso-C15:0 (55.5%) and iso-C17:1ω9c (8.8%). Whole genome sequencing revealed a 2.3-Mbp genome encoding a total of 2262 putative genes with a genomic DNA G + C content at 37.6 mol%. The average nucleotide identity (ANI) and in silico DNA-DNA hybridization (isDDH) values between strain UR159T and the most closely related members of the Flavobacteriaceae family were <75% and <39%, respectively, much below the established cut-offs for ANI (<95–96%) and isDDH (<70%) for species and genus delineation. Average Amino Acid Identity (AAI) percentages were also estimated and were lower than 65% (cut-off proposed for genus delineation for uncultivated prokaryotes) in all cases, except for F. marinum that was just at the limit (65.1%). Based on these findings, we propose it as a new genus and species, Avrilella dinanensis gen. nov., sp. nov. (type strain UR159T = CIP 111616T = DSM 105483T).



中文翻译:

divilensis gen。十一月,sp。nov。,一种从人血中分离出来的黄杆菌科新细菌。

2016年从法国住院的脓毒症患者的人血中分离出了一种新型细菌,命名为UR159 T,进行了多相分类学分析。初步的基于16S rRNA基因序列的系统发育分析表明,菌株UR159 T属于黄杆菌科,形成了与该家族已知物种远缘相关(<94%序列相似性)的独特系系。进行了进一步的表型,化学分类和基因组分析。细胞是不活动的,氧化酶阴性,过氧化氢酶阳性的革兰氏阴性棒。它是严格有氧的,产生黄色色素的菌落,并且在代谢上是惰性的。主要脂肪酸为异支链脂肪酸,主要为iso-C 15:0(55.5%)和异-C 17:1 ω 9 Ç(8.8%)。全基因组测序揭示了一个2.3 Mbp的基因组,该基因组总共编码2262个推定基因,其基因组DNA G + C含量为37.6 mol%。菌株UR159 T黄杆菌科家族中最亲近的成员之间的平均核苷酸同一性(ANI)和计算机DNA-DNA杂交(isDDH)值分别小于75%和39%,远低于既定的临界值对于物种和属的划分,ANI(<95–96%)和isDDH(<70%)。还估计了所有情况下的平均氨基酸同一性(AAI)百分比,这些百分比均低于65%(对于未培养的原核生物,建议的界线为界线),但海藻除外刚刚达到极限(65.1%)。基于这些发现,我们建议将其作为一种新的属和种,即Avrilella dinanensis属。十一月,sp。十一月 (类型UR159 T  = CIP 111616 T  = DSM 105483 T)。

更新日期:2020-07-18
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