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qSNE: Quadratic rate t-SNE optimizer with automatic parameter tuning for large data sets.
Bioinformatics ( IF 5.8 ) Pub Date : 2020-07-14 , DOI: 10.1093/bioinformatics/btaa637
Antti Häkkinen 1 , Juha Koiranen 1 , Julia Casado 1 , Katja Kaipio 2 , Oskari Lehtonen 1 , Eleonora Petrucci 3 , Johanna Hynninen 4 , Sakari Hietanen 4 , Olli Carpén 1, 2, 5 , Luca Pasquini 6 , Mauro Biffoni 3 , Rainer Lehtonen 1 , Sampsa Hautaniemi 1
Affiliation  

Nonparametric dimensionality reduction techniques, such as t-distributed stochastic neighbor embedding (t-SNE), are the most frequently used methods in the exploratory analysis of single-cell data sets. Current implementations scale poorly to massive data sets and often require downsampling or interpolative approximations, which can leave less frequent populations undiscovered and much information unexploited.

中文翻译:

qSNE:二次速率 t-SNE 优化器,具有针对大型数据集的自动参数调整功能。

非参数降维技术,例如 t 分布随机邻域嵌入 (t-SNE),是单细胞数据集探索性分析中最常用的方法。当前的实现对于海量数据集的扩展性很差,并且通常需要下采样或插值近似,这可能导致不太频繁的群体未被发现,并且许多信息未被利用。
更新日期:2020-07-14
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