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Expanding the Genetic Architecture of Nicotine Dependence and its Shared Genetics with Multiple Traits: Findings from the Nicotine Dependence GenOmics (iNDiGO) Consortium
bioRxiv - Genomics Pub Date : 2020-07-09 , DOI: 10.1101/2020.01.15.898858
Bryan C. Quach , Michael J. Bray , Nathan C. Gaddis , Mengzhen Liu , Teemu Palviainen , Camelia C. Minica , Stephanie Zellers , Richard Sherva , Fazil Aliev , Michael Nothnagel , Kendra A. Young , Jesse A. Marks , Hannah Young , Megan U. Carnes , Yuelong Guo , Alex Waldrop , Nancy Y.A. Sey , Maria T. Landi , Daniel W. McNeil , Dmitriy Drichel , Lindsay A. Farrer , Christina A. Markunas , Jacqueline M. Vink , Jouke-Jan Hottenga , William G. Iacono , Henry R. Kranzler , Nancy L. Saccone , Michael C. Neale , Pamela Madden , Marcella Rietschel , Mary L. Marazita , Matthew McGue , Hyejung Won , Richard Grucza , Danielle M. Dick , Joel Gelernter , Neil E. Caporaso , Timothy B. Baker , Dorret I. Boomsma , Jaakko Kaprio , John E. Hokanson , Scott Vrieze , Laura J. Bierut , Eric O. Johnson , Dana B. Hancock ,

Cigarette smoking is the leading cause of preventable morbidity and mortality. Knowledge is evolving on genetics underlying initiation, regular smoking, nicotine dependence (ND), and cessation. We performed a genome-wide association study using the Fagerström Test for ND (FTND) in 58,000 smokers of European or African ancestry. Five genome-wide significant loci, including two novel loci MAGI2/GNAI1 (rs2714700) and TENM2 (rs1862416) were identified, and loci reported for other smoking traits were extended to ND. Using the heaviness of smoking index (HSI) in the UK Biobank (N=33,791), rs2714700 was consistently associated, but rs1862416 was not associated, likely reflecting ND features not captured by the HSI. Both variants were cis-eQTLs (rs2714700 for MAGI2-AS3 in hippocampus, rs1862416 for TENM2 in lung), and expression of genes spanning ND-associated variants was enriched in cerebellum. SNP-based heritability of ND was 8.6%, and ND was genetically correlated with 17 other smoking traits (rg=0.40-0.95) and co-morbidities. Our results emphasize the FTND as a composite phenotype that expands genetic knowledge of smoking, including loci specific to ND.

中文翻译:

扩展尼古丁依赖性的遗传结构及其具有多种特征的共有遗传学:尼古丁依赖性基因组学(iNDiGO)联盟的发现

吸烟是可预防的发病率和死亡率的主要原因。知识正在演变为引发,经常吸烟,尼古丁依赖(ND)和戒烟的基础遗传学。我们使用FagerströmND检验(FTND)对58,000名欧洲或非洲血统的吸烟者进行了全基因组关联研究。确定了五个基因组范围内的重要基因座,包括两个新的基因座MAGI2 / GNAI1(rs2714700)和TENM2(rs1862416),并将报道的其他吸烟性状的基因座扩展到ND。使用英国生物库中的吸烟重度指数(HSI)(N = 33,791),rs2714700一直存在关联,但rs1862416没有关联,可能反映了HSI无法捕获的ND特征。两种变体均为cis-eQTLs(海马MAGI2-AS3为rs2714700,肺部TENM2为rs1862416),小脑中丰富了与ND相关变体的基因表达。基于SNP的ND遗传力为8.6%,并且ND与其他17种吸烟性状具有遗传相关性(g = 0.40-0.95)和合并症。我们的结果强调FTND是一种复合表型,可扩展吸烟的遗传知识,包括ND特异的基因座。
更新日期:2020-07-10
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