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New and Improved Tools for the Omics Crew.
Journal of Proteome Research ( IF 4.4 ) Pub Date : 2020-07-02 , DOI: 10.1021/acs.jproteome.0c00328
Laurence Florens 1 , Meng-Qiu Dong 2 , Joshua LaBaer 3
Affiliation  

This article is part of the Methods for Omics Research special issue. Figure 1. Overview of the omics methods compiled in this issue, sorted by the main step(s) of an analyte characterization pipeline they improved upon. Omics tools are numbered to reference each of the manuscripts introduced here. Abbreviations 1H-NMR, proton nuclear magnetic resonance; CAM, convex analysis of mixtures; CE, capillary electrophoresis; CFP, ChipFilter proteolysis; CID, collision-induced dissociation; COSS, CompOmics spectral searching; CSF, cerebrospinal fluid; DBS, dried blood spot; DMS-MRM, differential mobility spectrometry multiple reaction monitoring; EI, electron ionization; EThcD, electron-transfer dissociation (ETD) with supplementary HCD; EVTrap, extracellular vesicles total recovery and purification; FFPE, formalin-fixed paraffin-embedded; GPF, gas-phase fractionation; HCD, higher energy collision dissociation; hcd/HCD, higher-energy collisional dissociation with regular and very high energy; HILIC, hydrophilic interaction liquid chromatography; HR-GC, high-resolution gas chromatography; IFE, immunofixation electrophoresis; KISS, kinase substrate system; MS/MS, tandem mass spectrometry; MSI-CE, multisegment injection-capillary electrophoresis; MRM, multiple reaction monitoring; NCI, negative chemical ionization; pam, partition around medoids; PAM, prediction analysis of microarrays; PCI, positive chemical ionization; PCT, pressure cycling technology; PloGO2, plot gene ontology; PMT, photomultiplier tube; PRM, parallel reaction monitoring; RNA, ribonucleic acid; SAM, significance analysis of microarrays; SCP, sodium carbonate precipitation; SF, synovial fluid; SiTRAP, simultaneous trapping; SPE, serum protein electrophoresis; SWATH-MS, sequential window acquisition of all theoretical ion–mass spectra; TIF, tumor interstitial fluid; WGCNA, weighted gene correlation network analysis; XLMS, cross-linking mass spectrometry Views expressed in this editorial are those of the authors and not necessarily the views of the ACS. This article has not yet been cited by other publications. Figure 1. Overview of the omics methods compiled in this issue, sorted by the main step(s) of an analyte characterization pipeline they improved upon. Omics tools are numbered to reference each of the manuscripts introduced here. Abbreviations 1H-NMR, proton nuclear magnetic resonance; CAM, convex analysis of mixtures; CE, capillary electrophoresis; CFP, ChipFilter proteolysis; CID, collision-induced dissociation; COSS, CompOmics spectral searching; CSF, cerebrospinal fluid; DBS, dried blood spot; DMS-MRM, differential mobility spectrometry multiple reaction monitoring; EI, electron ionization; EThcD, electron-transfer dissociation (ETD) with supplementary HCD; EVTrap, extracellular vesicles total recovery and purification; FFPE, formalin-fixed paraffin-embedded; GPF, gas-phase fractionation; HCD, higher energy collision dissociation; hcd/HCD, higher-energy collisional dissociation with regular and very high energy; HILIC, hydrophilic interaction liquid chromatography; HR-GC, high-resolution gas chromatography; IFE, immunofixation electrophoresis; KISS, kinase substrate system; MS/MS, tandem mass spectrometry; MSI-CE, multisegment injection-capillary electrophoresis; MRM, multiple reaction monitoring; NCI, negative chemical ionization; pam, partition around medoids; PAM, prediction analysis of microarrays; PCI, positive chemical ionization; PCT, pressure cycling technology; PloGO2, plot gene ontology; PMT, photomultiplier tube; PRM, parallel reaction monitoring; RNA, ribonucleic acid; SAM, significance analysis of microarrays; SCP, sodium carbonate precipitation; SF, synovial fluid; SiTRAP, simultaneous trapping; SPE, serum protein electrophoresis; SWATH-MS, sequential window acquisition of all theoretical ion–mass spectra; TIF, tumor interstitial fluid; WGCNA, weighted gene correlation network analysis; XLMS, cross-linking mass spectrometry

中文翻译:

组学团队的新工具和改进工具。

这篇文章是其中的一部分组学研究方法专刊。图 1. 本期汇编的组学方法概述,按他们改进的分析物表征流程的主要步骤排序。对组学工具进行编号以引用此处介绍的每篇手稿。缩写 1H-NMR,质子核磁共振;CAM,混合物的凸分析;CE,毛细管电泳;CFP,ChipFilter 蛋白水解;CID,碰撞诱导解离;COSS,CompOmics 光谱搜索;CSF,脑脊液;DBS,干血斑;DMS-MRM,微分迁移率谱多反应监测;EI,电子电离;EThcD,电子转移解离 (ETD) 与补充 HCD;EVTrap,细胞外囊泡总回收纯化;FFPE,福尔马林固定石蜡包埋;GPF,气相分馏;氢氯乙烯,更高的能量碰撞解离;hcd/HCD,具有规则和非常高能量的高能碰撞解离;HILIC,亲水相互作用液相色谱;HR-GC,高分辨气相色谱;IFE,免疫固定电泳;KISS,激酶底物系统;MS/MS,串联质谱;MSI-CE,多段注射-毛细管电泳;MRM,多反应监测;NCI,负化学电离;pam,围绕中心点划分;PAM,微阵列预测分析;PCI,正化学电离;PCT,压力循环技术;PloGO2,情节基因本体;PMT,光电倍增管;PRM,平行反应监测;RNA,核糖核酸;SAM,微阵列的显着性分析;SCP,碳酸钠沉淀;SF,滑液;SiTRAP,同时捕获;固相萃取, 血清蛋白电泳;SWATH-MS,所有理论离子质谱的顺序窗口采集;TIF,肿瘤间质液;WGCNA,加权基因相关网络分析;XLMS,交联质谱 本社论中表达的观点是作者的观点,不一定代表 ACS 的观点。这篇文章尚未被其他出版物引用。图 1. 本期汇编的组学方法概述,按他们改进的分析物表征流程的主要步骤排序。对组学工具进行编号以引用此处介绍的每篇手稿。缩写 1H-NMR,质子核磁共振;CAM,混合物的凸分析;CE,毛细管电泳;CFP,ChipFilter 蛋白水解;CID,碰撞诱导解离;COSS,CompOmics 光谱搜索;脑脊液,脑脊液;DBS,干血斑;DMS-MRM,微分迁移率谱多反应监测;EI,电子电离;EThcD,电子转移解离 (ETD) 与补充 HCD;EVTrap,细胞外囊泡总回收纯化;FFPE,福尔马林固定石蜡包埋;GPF,气相分馏;HCD,高能碰撞解离;hcd/HCD,具有规则和非常高能量的高能碰撞解离;HILIC,亲水相互作用液相色谱;HR-GC,高分辨气相色谱;IFE,免疫固定电泳;KISS,激酶底物系统;MS/MS,串联质谱;MSI-CE,多段注射-毛细管电泳;MRM,多反应监测;NCI,负化学电离;pam,围绕中心点划分;帕姆, 微阵列的预测分析;PCI,正化学电离;PCT,压力循环技术;PloGO2,情节基因本体;PMT,光电倍增管;PRM,平行反应监测;RNA,核糖核酸;SAM,微阵列的显着性分析;SCP,碳酸钠沉淀;SF,滑液;SiTRAP,同时捕获;SPE,血清蛋白电泳;SWATH-MS,所有理论离子质谱的顺序窗口采集;TIF,肿瘤间质液;WGCNA,加权基因相关网络分析;XLMS,交联质谱法 滑液; SiTRAP,同时捕获;SPE,血清蛋白电泳;SWATH-MS,所有理论离子质谱的顺序窗口采集;TIF,肿瘤间质液;WGCNA,加权基因相关网络分析;XLMS,交联质谱法 滑液; SiTRAP,同时捕获;SPE,血清蛋白电泳;SWATH-MS,所有理论离子质谱的顺序窗口采集;TIF,肿瘤间质液;WGCNA,加权基因相关网络分析;XLMS,交联质谱法
更新日期:2020-07-02
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