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PRANC: ML species tree estimation from the ranked gene trees under coalescence.
Bioinformatics ( IF 5.8 ) Pub Date : 2020-07-01 , DOI: 10.1093/bioinformatics/btaa605
Anastasiia Kim 1 , James H Degnan 1
Affiliation  

PRANC computes the Probabilities of RANked gene tree topologies under the multispecies Coalescent. A ranked gene tree is a gene tree accounting for the temporal ordering of internal nodes. PRANC can also estimate the maximum likelihood species tree from a sample of ranked or unranked gene tree topologies. It estimates the maximum likelihood tree with estimated branch lengths in coalescent units.

中文翻译:

PRANC:从合并后的排名基因树估计ML物种树。

PRANC计算多物种合并下的RANked基因树拓扑的概率。排序的基因树是考虑内部节点时间顺序的基因树。PRANC还可以从排名或未排名的基因树拓扑结构样本中估计最大似然树。它以合并单元中的估计分支长度来估计最大似然树。
更新日期:2020-07-01
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