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Complete genome analysis of Pantoea agglomerans-infecting bacteriophage vB_PagM_AAM22.
Archives of Virology ( IF 2.7 ) Pub Date : 2020-06-18 , DOI: 10.1007/s00705-020-04705-4
Lidija Truncaitė 1 , Monika Šimoliūnienė 1 , Laurynas Alijošius 1 , Emilija Petrauskaitė 1 , Laura Kiaušaitė 1 , Rolandas Meškys 1 , Martynas Skapas 2 , Eugenijus Šimoliūnas 1
Affiliation  

A novel myovirus, vB_PagM_AAM22 (AAM22), was isolated in Lithuania using Pantoea agglomerans as the host for phage propagation. The 49,744-bp genome of AAM22 has a G + C content of 48.4% and contains 96 probable protein-encoding genes and no genes for tRNA. In total, 34 ORFs were given a putative functional annotation, including genes associated with virion morphogenesis, DNA metabolism, and phage-host interactions. Based on comparative phylogenetic analysis, AAM22 cannot be assigned to any genus currently recognized by the ICTV and is a potential candidate to form a new genus within the family Myoviridae.



中文翻译:

感染泛菌的噬菌体vB_PagM_AAM22的完整基因组分析。

使用泛集聚体作为噬菌体繁殖的宿主,在立陶宛分离出一种新型的肌病毒vB_PagM_AAM22(AAM22)。AAM22的49744 bp基因组的G + C含量为48.4%,包含96个可能的蛋白质编码基因,而没有tRNA基因。总共对34个ORF进行了功能推测,包括与病毒体形态发生,DNA代谢和噬菌体-宿主相互作用相关的基因。根据比较系统发育分析,AAM22不能分配给ICTV当前认可的任何属,并且是在肌病毒科中形成新属的潜在候选

更新日期:2020-08-05
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