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Development of a portable reverse transcription loop-mediated isothermal amplification system to detect the E1 region of Chikungunya virus in a cost-effective manner.
Genes to Cells ( IF 2.1 ) Pub Date : 2020-06-19 , DOI: 10.1111/gtc.12797
Benjawan Saechue 1 , Naganori Kamiyama 1 , Yinan Wang 1 , Chiaki Fukuda 1 , Kei Watanabe 1 , Yasuhiro Soga 1 , Mizuki Goto 1 , Astri Dewayani 1 , Shimpei Ariki 1 , Haruna Hirose 1 , Sotaro Ozaka 1 , Nozomi Sachi 1 , Shinya Hidano 1 , Khaledul Faisal 2 , Rajashree Chowdhury 2 , Md Anik Ashfaq Khan 2 , Faria Hossain 2 , Prakash Ghosh 2 , Tahmina Shirin 3 , Dinesh Mondal 2 , Kazunari Murakami 4 , Takashi Kobayashi 1
Affiliation  

Chikungunya fever is a mosquito‐borne disease cause of persistent arthralgia. The current diagnosis of Chikungunya virus (CHIKV) relies on a conventional reverse transcription polymerase chain reaction assay. Reverse transcription loop‐mediated isothermal amplification (RT‐LAMP) is a rapid and simple tool used for DNA‐based diagnosis of a variety of infectious diseases. In this study, we established an RT‐LAMP system to recognize CHIKV by targeting the envelope protein 1 (E1) gene that could also detect CHIKV at a concentration of 8 PFU without incorrectly detecting other mosquito‐borne viruses. The system also amplified the E1 genome in the serum of CHIKV‐infected mice with high sensitivity and specificity. Moreover, we established a dry RT‐LAMP system that can be transported without a cold chain, which detected the virus genome in CHIKV‐infected patient samples with high accuracy. Thus, the dry RT‐LAMP system has great potential to be applied as a novel CHIKV screening kit in endemic areas.

中文翻译:

开发便携式逆转录环介导的等温扩增系统,以经济高效的方式检测基孔肯雅病毒的E1区。

基孔肯雅热是由蚊子引起的疾病,持续性关节痛。基孔肯雅病毒(CHIKV)的当前诊断依赖于常规的逆转录聚合酶链反应分析。逆转录环介导的等温扩增(RT-LAMP)是一种快速简单的工具,可用于基于DNA的多种传染病诊断。在这项研究中,我们建立了一个RT-LAMP系统,通过靶向包膜蛋白1(E1)基因识别CHIKV,该基因也可以检测8 PFU浓度的CHIKV,而不会错误地检测其他蚊媒病毒。该系统还以高灵敏度和特异性扩增了CHIKV感染小鼠血清中的E1基因组。此外,我们建立了干式RT‐LAMP系统,无需冷链即可运输,可以在感染CHIKV的患者样本中高精度检测出病毒基因组。因此,干式RT‐LAMP系统在流行地区具有作为新型CHIKV筛查试剂盒的巨大潜力。
更新日期:2020-06-19
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