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Interfamilial relationships in order Fabales: new insights from the nuclear regions sqd1 and 26S rDNA
Plant Systematics and Evolution ( IF 1.9 ) Pub Date : 2020-06-13 , DOI: 10.1007/s00606-020-01691-7
Deniz Aygoren Uluer , Julie A. Hawkins , Félix Forest

Leguminosae, Polygalaceae, Quillajaceae and Surianaceae together comprise the order Fabales. Phylogenetic relationships within Fabales remain an unsolved problem even though interfamilial relationships have been examined in a number of studies using different sampling approaches and both molecular and morphological data. In this study, we gather information from the nuclear 26S rDNA region as well as previously published data from the sqd1,matK and rbcL regions. Phylogenetic analyses were performed by maximum parsimony, maximum likelihood and Bayesian inference. Overall, the best-supported topology for the relationships among families within the order places the pair of Leguminosae and Polygalaceae as sister to the pair of Quillajaceae and Surianaceae. However, our approximately unbiased (AU) test of the combined data results has shown that none of the seven different topologies rejected. Furthermore, three topologies were not significantly different from each other. Therefore, similar to the previous studies, this study did not find well-supported dichotomous relationships among the four Fabales families. The Fabales topology was very sensitive to both data choice and the phylogenetic methods used, which may indicate a rapid-near-simultaneous evolution of the four Fabales families. Our results also show that while nuclear sqd1 can be helpful as a complementary region, both the nuclear sqd1 and rDNA 26S regions could be problematic when analyzed individually.

中文翻译:

Fabales 中的家族间关系:来自核区 sqd1 和 26S rDNA 的新见解

豆科、远志科、Quillajaceae 和 Surianaceae 一起构成豆科植物。尽管在许多研究中使用不同的采样方法以及分子和形态数据检查了家族间关系,但 Fabales 内的系统发育关系仍然是一个未解决的问题。在这项研究中,我们从核 26S rDNA 区域以及之前发布的来自 sqd1、matK 和 rbcL 区域的数据中收集信息。通过最大简约、最大似然和贝叶斯推理进行系统发育分析。总体而言,该目内各科之间关系的最佳支持拓扑将豆科和远志科作为一对Quillajaceae 和Surianaceae 的姐妹。然而,我们对组合数据结果的近似无偏 (AU) 测试表明,七种不同的拓扑都没有被拒绝。此外,三种拓扑结构彼此之间没有显着差异。因此,与之前的研究类似,本研究并未发现四个法巴莱斯家族之间存在充分支持的二分关系。Fabales 拓扑结构对数据选择和使用的系统发育方法都非常敏感,这可能表明四个 Fabales 家族的快速近乎同时进化。我们的结果还表明,虽然核 sqd1 可以作为互补区域有所帮助,但核 sqd1 和 rDNA 26S 区域在单独分析时可能会出现问题。与之前的研究类似,本研究没有发现四个法巴莱斯家族之间存在充分支持的二分关系。Fabales 拓扑结构对数据选择和使用的系统发育方法都非常敏感,这可能表明四个 Fabales 家族的快速近乎同时进化。我们的结果还表明,虽然核 sqd1 可以作为互补区域有所帮助,但核 sqd1 和 rDNA 26S 区域在单独分析时可能会出现问题。与之前的研究类似,本研究并未发现四个法巴莱斯家族之间存在充分支持的二分关系。Fabales 拓扑结构对数据选择和使用的系统发育方法都非常敏感,这可能表明四个 Fabales 家族的快速近乎同时进化。我们的结果还表明,虽然核 sqd1 可以作为互补区域有所帮助,但核 sqd1 和 rDNA 26S 区域在单独分析时可能会出现问题。
更新日期:2020-06-13
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