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Characteristic of complete mitochondrial genome and phylogenetic status of a muskrat, Ondatra zibethicus (Rodentia: Cricetidae) in South Korea
Mitochondrial DNA Part B ( IF 0.610 ) Pub Date : 2020-05-22 , DOI: 10.1080/23802359.2020.1768916
Young-Chae Kim 1 , Do-Hun Lee 2 , Hae-Jun Baek 2 , Areum Kim 1 , Jemin Lee 1 , Min-Han Kim 2 , Yong-Ho Kwon 3 , Yung Kun Kim 1
Affiliation  

Abstract

The complete mitochondrial genome of Muskrat, Ondatra zibethicus (Rodentia: Cricetidae) in Korea was sequenced for the first time using the next-generation sequencing method to understand its evolutionary relationship and to be helpful to establish a management plan. This mitogenome was 16,350 base pairs in length, containing 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes, and one control region. Its overall A, C, G, and T contents were 32.0%, 26.9%, 12.6%, and 28.5%, respectively. A + T content (63.7%) was higher than G + C content (36.3%). We made the phylogenetic tree of muskrat and other 12 species of order Rodentia distributed in Korea.



中文翻译:

麝香的Ondatra zibethicus(Rodentia:Cricetidae)的完整线粒体基因组特征和系统发育状况

摘要

使用下一代测序方法首次对韩国麝香鼠Ondatra zibethicus(Rodentia:Cricetidae)的线粒体完整基因组进行了测序,以了解其进化关系并有助于制定管理计划。该有丝分裂基因组的长度为16,350个碱基对,包含13个蛋白质编码基因,22个转移RNA基因,两个核糖体RNA基因和一个控制区。它的总A,C,G和T含量分别为32.0%,26.9%,12.6%和28.5%。A + T含量(63.7%)高于G + C含量(36.3%)。我们制作了麝香鼠和其他分布在韩国的12种啮齿目动物的系统发育树。

更新日期:2020-05-22
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