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A modified CTAB and Trizol® protocol for high-quality RNA extraction from whole wheat seedlings, including rhizosphere
Cereal Research Communications ( IF 1.6 ) Pub Date : 2020-05-19 , DOI: 10.1007/s42976-020-00046-9
L. A. Chaparro-Encinas , G. L. Arellano-Wattenbarger , F. I. Parra-Cota , S. de los Santos-Villalobos

The RNA extraction was performed from foliar (F) and whole wheat plants (including rhizosphere) (WP) samples by (1) the standard TRIzol® protocol, and (2) a modified CTAB and TRIzol® protocol. The modified CTAB and TRIzol® protocol was able to extract high-quality RNA (205.96 ± 18.7 ng/µL for F, and 231.76 ± 66.8 ng/µL for WP; RIN > 8.0), compared to the standard TRIzol® protocol (92.73 ± 24.2 ng/µL for F, and WP completely degraded, RIN < 8.0). Real-time RT-PCR assay was carried out for 6-SFT1 (target) and 18S rRNA (housekeeping) genes, which showed a PCR efficiency of 111% and 118%, respectively, and a no significant relative expression (3773 ± 1383.8 for F and 2847 ± 1037.5 for WP) was observed from RNA extracted by the modified protocol. The modified CTAB and TRIzol® protocol was able to produce high-quality RNA (yield, purity, and integrity) from foliar and whole wheat plants (including rhizosphere with recalcitrant properties).

中文翻译:

用于从全麦幼苗(包括根际)中提取高质量 RNA 的改良 CTAB 和 Trizol® 方案

使用 (1) 标准 TRIzol® 方案和 (2) 修改后的 CTAB 和 TRIzol® 方案从叶 (F) 和全麦植物(包括根际)(WP) 样品中提取 RNA。与标准 TRIzol® 方案 (92.73 ± 8.0) 相比,改进的 CTAB 和 TRIzol® 方案能够提取高质量的 RNA(F 为 205.96 ± 18.7 ng/µL,WP 为 231.76 ± 66.8 ng/µL;RIN > 8.0) F 为 24.2 ng/µL,WP 完全降解,RIN < 8.0)。对 6-SFT1(靶点)和 18S rRNA(管家)基因进行实时 RT-PCR 检测,PCR 效率分别为 111% 和 118%,无显着相对表达(3773±1383.8 F 和 WP 的 2847 ± 1037.5) 从修改后的协议提取的 RNA 中观察到。修改后的 CTAB 和 TRIzol® 方案能够产生高质量的 RNA(产量、纯度、
更新日期:2020-05-19
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