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A multiple-testing procedure for high-dimensional mediation hypotheses
Journal of the American Statistical Association ( IF 3.7 ) Pub Date : 2020-05-15
James Y. Dai, Janet L. Stanford, Michael LeBlanc

Mediation analysis is of rising interest in epidemiology and clinical trials. Among existing methods, the joint significance (JS) test yields an overly conservative type I error rate and low power, particularly for high-dimensional mediation hypotheses. In this article we develop a multiple-testing procedure that accurately controls the family-wise error rate (FWER) and the false discovery rate (FDR) when testing high-dimensional mediation hypotheses. The core of our procedure is based on estimating the proportions of component null hypotheses and the underlying mixture null distribution of p-values. Theoretical developments and simulation experiments prove that the proposed procedure effectively controls FWER and FDR. Two mediation analyses on DNA methylation and cancer research are presented: assessing the mediation role of DNA methylation in genLetic regulation of gene expression in primary prostate cancer samples; exploring the possibility of DNA methylation mediating the effect of exercise on prostate cancer progression. Results of data examples include wellL-behaved quantile-quantile plots and improved power to detect novel mediation relationships. An R package HDMT implementing the proposed procedure is freely accessible in CRAN.



中文翻译:

高维调解假设的多重检验程序

中介分析在流行病学和临床试验中的兴趣日益浓厚。在现有方法中,联合重要性(JS)检验会产生过于保守的I型错误率和较低的功效,尤其是对于高维调解假设而言。在本文中,我们开发了一种多重测试程序,可以在测试高维调解假设时准确地控制家庭错误率(FWER)和错误发现率(FDR)。我们程序的核心是基于估计分量零假设的比例和p值的基础混合零分布。理论发展和仿真实验证明,该程序有效地控制了FWER和FDR。提出了两种关于DNA甲基化和癌症研究的中介分析:评估DNA甲基化在遗传调控原发性前列腺癌样本中基因表达的介导作用;探索DNA甲基化介导运动对前列腺癌进展的影响的可能性。数据示例的结果包括行为良好的分位数-分位数图和提高的检测新型调解关系的能力。可以在CRAN中免费访问实现建议的过程的R包HDMT。

更新日期:2020-05-15
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