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Development of a set of SNP markers for population genetics of the red gorgonian ( Paramuricea clavata ), an emblematic species of the Mediterranean coralligenous
Conservation Genetics Resources ( IF 1.1 ) Pub Date : 2020-03-04 , DOI: 10.1007/s12686-020-01139-7
M. Padrón , M. Milhes , M. Massot , E. Guichoux

Transcriptome sequencing was used for the development of single nucleotide polymorphisms (SNP) for the red gorgonian (Paramuricea clavata). A total of 20,736 SNPs were identified, and 1718 had a coverage of over 100 reads. Of the 480 SNPs tested, 347 SNPs were successfully genotyped at 95 samples from the NW Mediterranean using a MassARRAY System. This set of markers will be of great value for population genetics and phylogeography.



中文翻译:

开发了一套用于SNP标记的种群遗传学,该种群为地中海珊瑚属的标志性物种红色猩猩(Paramuricea clavata)

转录组测序被用于开发红(Parargomericea clavata)的单核苷酸多态性(SNP )。总共鉴定出20736个SNP,其中1718个覆盖100多个读段。在测试的480个SNP中,使用MassARRAY系统在来自地中海西北的95个样本中成功地对347个SNP进行了基因分型。这组标记物对于种群遗传学和系统地理学将具有重要价值。

更新日期:2020-03-04
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