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Epitranscriptomic 5-Methylcytosine Profile in PM2.5-induced Mouse Pulmonary Fibrosis.
Genomics, Proteomics & Bioinformatics ( IF 9.5 ) Pub Date : 2020-03-03 , DOI: 10.1016/j.gpb.2019.11.005
Xiao Han 1 , Hanchen Liu 2 , Zezhong Zhang 3 , Wenlan Yang 4 , Chunyan Wu 3 , Xueying Liu 2 , Fang Zhang 2 , Baofa Sun 5 , Yongliang Zhao 5 , Guibin Jiang 6 , Yun-Gui Yang 7 , Wenjun Ding 3
Affiliation  

Exposure of airborne particulate matter (PM) with an aerodynamic diameter less than 2.5 μm (PM2.5) is epidemiologically associated with lung dysfunction and respiratory symptoms, including pulmonary fibrosis. However, whether epigenetic mechanisms are involved in PM2.5-induced pulmonary fibrosis is currently poorly understood. Herein, using a PM2.5-induced pulmonary fibrosis mouse model, we found that PM2.5 exposure leads to aberrant mRNA 5-methylcytosine (m5C) gain and loss in fibrotic lung tissues. Moreover, we showed the m5C-mediated regulatory map of gene functions in pulmonary fibrosis after PM2.5 exposure. Several genes act as m5C gain-upregulated factors, probably critical for the development of PM2.5-induced fibrosis in mouse lungs. These genes, including Lcn2, Mmp9, Chi3l1, Adipoq, Atp5j2, Atp5l, Atpif1, Ndufb6, Fgr, Slc11a1, and Tyrobp, are highly related to oxidative stress response, inflammatory responses, and immune system processes. Our study illustrates the first epitranscriptomic RNA m5C profile in PM2.5-induced pulmonary fibrosis and will be valuable in identifying biomarkers for PM2.5 exposure-related lung pathogenesis with translational potential.



中文翻译:

PM2.5 诱导的小鼠肺纤维化的表观转录组 5-甲基胞嘧啶谱。

流行病学上,暴露空气动力学直径小于 2.5 μm 的颗粒物 (PM 2.5 ) 与肺功能障碍和呼吸道症状(包括肺纤维化)相关。然而,目前对于 PM 2.5诱导的肺纤维化是否涉及表观遗传机制尚不清楚。在此,使用 PM 2.5诱导的肺纤维化小鼠模型,我们发现PM 2.5暴露会导致纤维化肺组织中mRNA 5-甲基胞嘧啶 (m 5 C) 的异常增加和减少。此外,我们还展示了PM 2.5暴露后肺纤维化中 m 5 C 介导的基因功能调控图。一些基因充当 m 5 C 增益上调因子,可能对 PM 2.5诱导的小鼠肺部纤维化的发展至关重要。这些基因包括Lcn2Mmp9Chi3l1AdipoqAtp5j2Atp5l 、 Atpif1Ndufb6FgrSlc11a1Tyrobp,与氧化应激反应、炎症反应和免疫系统过程高度相关。我们的研究阐明了 PM 2.5诱导的肺纤维化中的第一个表观转录组 RNA m 5 C 谱,对于识别与 PM 2.5暴露相关的肺发病机制具有转化潜力的生物标志物具有重要价值。

更新日期:2020-03-03
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