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Measuring the distribution of fitness effects in somatic evolution by combining clonal dynamics with dN/dS ratios
eLife ( IF 7.7 ) Pub Date : 2020-03-30
Marc J Williams, Luis Zapata, Benjamin Werner, Chris P Barnes, Andrea Sottoriva, Trevor A Graham

The distribution of fitness effects (DFE) defines how new mutations spread through an evolving population. The ratio of non-synonymous to synonymous mutations (dN/dS) has become a popular method to detect selection in somatic cells. However the link, in somatic evolution, between dN/dS values and fitness coefficients is missing. Here we present a quantitative model of somatic evolutionary dynamics that determines the selective coefficients of individual driver mutations from dN/dS estimates. We then measure the DFE for somatic mutant clones in ostensibly normal oesophagus and skin. We reveal a broad distribution of fitness effects, with the largest fitness increases found for TP53 and NOTCH1 mutants (proliferative bias 1–5%). This study provides the theoretical link between dN/dS values and selective coefficients in somatic evolution, and measures the DFE of mutations in human tissues.

中文翻译:

通过将克隆动力学与dN / dS比值相结合来测量体细胞进化中适应性效应的分布

适应性效应(DFE)的分布定义了新突变如何在不断发展的种群中传播。非同义突变与同义突变的比率(dN / dS)已成为检测体细胞选择的一种流行方法。但是,在体细胞进化中,dN / dS值与适应性系数之间的联系丢失了。在这里,我们提出了一种体细胞进化动力学的定量模型,该模型确定了来自dN / dS估计值的单个驾驶员突变的选择性系数。然后,我们测量表面正常食管和皮肤中的体细胞突变体克隆的DFE。我们揭示了健身效果的广泛分布,其中TP53和NOTCH1突变体(增殖偏倚1-5%)的健身增加幅度最大。这项研究提供了dN / dS值与体细胞进化中选择系数之间的理论联系,
更新日期:2020-03-30
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