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Design and Combinatorial Development of Shield-1 Peptide Mimetics Binding to Destabilized FKBP12.
ACS Combinatorial Science ( IF 3.903 ) Pub Date : 2020-02-06 , DOI: 10.1021/acscombsci.9b00197
Daniel Madsen , Frederik P. Jørgensen , Daniel Palmer , Milena E. Roux , Jakob V. Olsen , Mikael Bols , Sanne Schoffelen , Frederik Diness , Morten Meldal

On the basis of computational design, a focused one-bead one-compound library has been prepared on microparticle-encoded PEGA1900 beads consisting of small tripeptides with a triazole-capped N-terminal. The library was screened towards a double point-mutated version of the human FKBP12 protein, known as the destabilizing domain (DD). Inspired by the decoded library hits, unnatural peptide structures were screened in a novel on-bead assay, which was useful for a rapid structure evaluation prior to off-bead resynthesis. Subsequently, a series of 19 compounds were prepared and tested using a competitive fluorescence polarization assay, which led to the discovery of peptide ligands with low micromolar binding affinity towards the DD. The methodology represents a rapid approach for identification of a novel structure scaffold, where the screening and initial structure refinement was accomplished using small quantities of library building blocks.

中文翻译:

结合不稳定的FKBP12的Shield-1肽模拟物的设计和组合开发。

在计算设计的基础上,已针对由小三肽和三唑封端的N末端组成的微粒编码的PEGA1900珠制备了聚焦的单珠单化合物文库。针对人FKBP12蛋白的双点突变版本(称为去稳定结构域(DD))筛选了该文库。受解码的文库命中率的启发,在新颖的珠上检测方法中筛选了非天然肽结构,这对于在离珠重新合成之前进行快速结构评估很有用。随后,制备了19种化合物,并使用竞争荧光偏振分析法进行了测试,这导致发现了对DD具有低微摩尔结合亲和力的肽配体。该方法代表了一种鉴定新型结构支架的快速方法,
更新日期:2020-02-23
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