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Five Years of the KNIME Vernalis Cheminformatics Community Contribution.
Current Medicinal Chemistry ( IF 4.1 ) Pub Date : 2020-10-31 , DOI: 10.2174/0929867325666180904113616
Stephen D Roughley 1
Affiliation  

Since the official release as a KNIME Community Contribution in June 2013, the Vernalis KNIME nodes have increased from a single node (the ‘PDB Connector’ node) to around 126 nodes (November 2017; Version 1.12.0); furthermore, a number of nodes have been adopted into the core KNIME product. In this review, we provide a brief timeline of the development of the current public release and an overview of the current nodes. We will focus in more detail on three particular areas: nodes accessing publicly available information via web services, nodes providing cheminformatics functionality without recourse to a cheminformatics toolkit, and nodes using one of the cheminformatics toolkits present in KNIME. We will conclude with a number of case studies demonstrating the use of KNIME at Vernalis.



中文翻译:

KNIME Vernalis 化学信息学社区贡献五年。

自 2013 年 6 月作为 KNIME 社区贡献正式发布以来,Vernalis KNIME 节点已从单个节点(“PDB Connector”节点)增加到约 126 个节点(2017 年 11 月;版本 1.12.0);此外,核心KNIME产品中还采用了许多节点。在这篇评论中,我们提供了当前公开版本开发的简要时间表以及当前节点的概述。我们将更详细地关注三个特定领域:通过 Web 服务访问公开信息的节点、无需借助化学信息学工具包即可提供化学信息学功能的节点,以及使用 KNIME 中存在的化学信息学工具包之一的节点。最后,我们将通过一些案例研究来展示 KNIME 在 Vernalis 的使用情况。

更新日期:2020-11-12
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