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A genetic screen identifies a role for oprF in Pseudomonas aeruginosa biofilm stimulation by subinhibitory antibiotics npj Biofilms Microbiomes (IF 9.2) Pub Date : 2024-03-23 Luke N. Yaeger, Michael R. M. Ranieri, Jessica Chee, Sawyer Karabelas-Pittman, Madeleine Rudolph, Alessio M. Giovannoni, Hanjeong Harvey, Lori L. Burrows
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Promastigote EPS secretion and haptomonad biofilm formation as evolutionary adaptations of trypanosomatid parasites for colonizing honeybee hosts npj Biofilms Microbiomes (IF 9.2) Pub Date : 2024-03-21 Jéssica Carreira de Paula, Pedro García Olmedo, Tamara Gómez-Moracho, María Buendía-Abad, Mariano Higes, Raquel Martín-Hernández, Antonio Osuna, Luis Miguel de Pablos
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Integrative metagenomic and metabolomic analyses reveal the potential of gut microbiota to exacerbate acute pancreatitis npj Biofilms Microbiomes (IF 9.2) Pub Date : 2024-03-21 Jianjun Liu, Qiulong Yan, Shenghui Li, Juying Jiao, Yiming Hao, Guixin Zhang, Qingkai Zhang, Fei Luo, Yue Zhang, Qingbo Lv, Wenzhe Zhang, Aiqin Zhang, Huiyi Song, Yi Xin, Yufang Ma, Lawrence Owusu, Xiaochi Ma, Peiyuan Yin, Dong Shang
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Extracellular vesicles from vaginal Gardnerella vaginalis and Mobiluncus mulieris contain distinct proteomic cargo and induce inflammatory pathways npj Biofilms Microbiomes (IF 9.2) Pub Date : 2024-03-21 Andrea Joseph, Lauren Anton, Yuxia Guan, Briana Ferguson, Isabella Mirro, Nova Meng, Michael France, Jacques Ravel, Michal A. Elovitz
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Metabolic profiles outperform the microbiota in assessing the response of vaginal microenvironments to the changed state of HPV infection npj Biofilms Microbiomes (IF 9.2) Pub Date : 2024-03-20 Wenkui Dai, Hui Du, Qian Zhou, Sumei Li, Yinan Wang, Jun Hou, Chunlei Guo, Qing Yang, Changzhong Li, Shouxia Xie, Shuai Cheng Li, Ruifang Wu
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Lactobacillus rhamnosus GG ameliorates hyperuricemia in a novel model npj Biofilms Microbiomes (IF 9.2) Pub Date : 2024-03-20 Yang Fu, Yong-Song Chen, Dai-Yang Xia, Xiao-Dan Luo, Hao-Tong Luo, Jie Pan, Wei-Qing Ma, Jin-Ze Li, Qian-Yuan Mo, Qiang Tu, Meng-Meng Li, Yue Zhao, Yu Li, Yi-Teng Huang, Zhi-Xian Chen, Zhen-Jun Li, Lukuyu Bernard, Michel Dione, You-Ming Zhang, Kai Miao, Jian-Ying Chen, Shan-Shan Zhu, Jie Ren, Ling-Juan Zhou, Xian-Zhi Jiang, Juan Chen, Zhen-Ping Lin, Jun-Peng Chen, Hui Ye, Qing-Yun Cao, Yong-Wen Zhu
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Competition quenching strategies reduce antibiotic tolerance in polymicrobial biofilms npj Biofilms Microbiomes (IF 9.2) Pub Date : 2024-03-19 Bram Lories, Tom E. R. Belpaire, Bart Smeets, Hans P. Steenackers
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Ginseng extracts improve circadian clock gene expression and reduce inflammation directly and indirectly through gut microbiota and PI3K signaling pathway npj Biofilms Microbiomes (IF 9.2) Pub Date : 2024-03-19 Xue-Ying Zhang, Saeid Khakisahneh, Song-Yi Han, Eun-Ji Song, Young-Do Nam, Hojun Kim
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Bacterial capsules: Occurrence, mechanism, and function npj Biofilms Microbiomes (IF 9.2) Pub Date : 2024-03-13 Shuji Gao, Wenjie Jin, Yingying Quan, Yue Li, Yamin Shen, Shuo Yuan, Li Yi, Yuxin Wang, Yang Wang
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Intestinal dual-specificity phosphatase 6 regulates the cold-induced gut microbiota remodeling to promote white adipose browning npj Biofilms Microbiomes (IF 9.2) Pub Date : 2024-03-13 Pei-Chen Chen, Tzu-Pei Tsai, Yi-Chu Liao, Yu-Chieh Liao, Hung-Wei Cheng, Yi-Hsiu Weng, Chiao-Mei Lin, Cheng-Yuan Kao, Chih-Cheng Tai, Jhen-Wei Ruan
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On validly published names, correct names, and changes in the nomenclature of phyla and genera of prokaryotes: a guide for the perplexed npj Biofilms Microbiomes (IF 9.2) Pub Date : 2024-03-11 Aharon Oren
The nomenclature of prokaryotes is regulated by the rules of the International Code of Nomenclature of Prokaryotes. In view of inconsistencies in the use of names of many prokaryotic taxa and confusion caused by recent nomenclature changes, this essay presents an overview of how to use correct names of taxa. It includes information on validly published names of prokaryotic phyla, the way to deal with
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Sociobiome - Individual and neighborhood socioeconomic status influence the gut microbiome in a multi-ethnic population in the US npj Biofilms Microbiomes (IF 9.2) Pub Date : 2024-03-11 Soyoung Kwak, Mykhaylo Usyk, Dia Beggs, Heesun Choi, Dariush Ahdoot, Feng Wu, Lorraine Maceda, Huilin Li, Eun-Ok Im, Hae-Ra Han, Eunjung Lee, Anna H. Wu, Richard B. Hayes, Jiyoung Ahn
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Short term supplementation with cranberry extract modulates gut microbiota in human and displays a bifidogenic effect npj Biofilms Microbiomes (IF 9.2) Pub Date : 2024-03-06 Jacob Lessard-Lord, Charlène Roussel, Joseph Lupien-Meilleur, Pamela Généreux, Véronique Richard, Valérie Guay, Denis Roy, Yves Desjardins
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Effect of model methanogens on the electrochemical activity, stability, and microbial community structure of Geobacter spp. dominated biofilm anodes npj Biofilms Microbiomes (IF 9.2) Pub Date : 2024-03-05 Daniel Dzofou Ngoumelah, Tonje Marita Bjerkan Heggeset, Tone Haugen, Snorre Sulheim, Alexander Wentzel, Falk Harnisch, Jörg Kretzschmar
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Optimization of an in vitro Pseudomonas aeruginosa Biofilm Model to Examine Antibiotic Pharmacodynamics at the Air-Liquid Interface npj Biofilms Microbiomes (IF 9.2) Pub Date : 2024-03-01 Xing Tan, Yanqin Huang, Amisha Rana, Nidhi Singh, Taylor C. Abbey, Hui Chen, Peter T. Toth, Zackery P. Bulman
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Thwarting resistance: MgrA inhibition with methylophiopogonanone a unveils a new battlefront against S. aureus npj Biofilms Microbiomes (IF 9.2) Pub Date : 2024-02-27 Xuerui Guo, Li Wang, Jinlong Zhang, Quan Liu, Bingmei Wang, Da Liu, Fei Gao, Gongga Lanzi, Yicheng Zhao, Yan Shi
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How probiotics, prebiotics, synbiotics, and postbiotics prevent dental caries: an oral microbiota perspective npj Biofilms Microbiomes (IF 9.2) Pub Date : 2024-02-24 Si-Chen Luo, Si-Min Wei, Xin-Tao Luo, Qiong-Qiong Yang, Ka-Hing Wong, Peter C. K. Cheung, Bo-Bo Zhang
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Faecal hsa-miR-7704 inhibits the growth and adhesion of Bifidobacterium longum by suppressing ProB and aggravates hepatic encephalopathy npj Biofilms Microbiomes (IF 9.2) Pub Date : 2024-02-24 Yuchong Wang, Yuyu Li, Longxian Lv, Liying Zhu, Liang Hong, Xueyao Wang, Yu Zhang, Xin Wang, Hongyan Diao
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The intestinal digesta microbiota of tropical marine fish is largely uncultured and distinct from surrounding water microbiota npj Biofilms Microbiomes (IF 9.2) Pub Date : 2024-02-19 Melissa Soh, Ywee Chieh Tay, Co Sin Lee, Adrian Low, Laszlo Orban, Zeehan Jaafar, Henning Seedorf
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Favorable subgingival plaque microbiome shifts are associated with clinical treatment for peri-implant diseases npj Biofilms Microbiomes (IF 9.2) Pub Date : 2024-02-19 Davide Bazzani, Vitor Heidrich, Paolo Manghi, Aitor Blanco-Miguez, Francesco Asnicar, Federica Armanini, Sara Cavaliere, Alberto Bertelle, Federico Dell’Acqua, Ester Dellasega, Romina Waldner, Daniela Vicentini, Mattia Bolzan, Cristiano Tomasi, Nicola Segata, Edoardo Pasolli, Paolo Ghensi
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Oral and middle ear delivery of otitis media standard of care antibiotics, but not biofilm-targeted antibodies, alter chinchilla nasopharyngeal and fecal microbiomes npj Biofilms Microbiomes (IF 9.2) Pub Date : 2024-02-03 Audrey F. Duff, Joseph A. Jurcisek, Nikola Kurbatfinski, Tendy Chiang, Steven D. Goodman, Lauren O. Bakaletz, Michael T. Bailey
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Elevated methane flux in a tropical peatland post-fire is linked to depth-dependent changes in peat microbiome assembly npj Biofilms Microbiomes (IF 9.2) Pub Date : 2024-01-23 Aditya Bandla, Hasan Akhtar, Massimo Lupascu, Rahayu Sukmaria Sukri, Sanjay Swarup
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Responses of drinking water bulk and biofilm microbiota to elevated water age in bench-scale simulated distribution systems npj Biofilms Microbiomes (IF 9.2) Pub Date : 2024-01-22 Hannah Greenwald Healy, Aliya Ehde, Alma Bartholow, Rose S. Kantor, Kara L. Nelson
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Enhancing tumor-specific recognition of programmable synthetic bacterial consortium for precision therapy of colorectal cancer npj Biofilms Microbiomes (IF 9.2) Pub Date : 2024-01-20 Tuoyu Zhou, Jingyuan Wu, Haibo Tang, Dali Liu, Byong-Hun Jeon, Weilin Jin, Yiqing Wang, Yuanzhang Zheng, Aman Khan, Huawen Han, Xiangkai Li
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Endogenous Coriobacteriaceae enriched by a high-fat diet promotes colorectal tumorigenesis through the CPT1A-ERK axis npj Biofilms Microbiomes (IF 9.2) Pub Date : 2024-01-20 Qiulin Tang, Huixi Huang, Huanji Xu, Hongwei Xia, Chenliang Zhang, Di Ye, Feng Bi
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Long-term intake of Lactobacillus helveticus enhances bioavailability of omega-3 fatty acids in the mouse retina npj Biofilms Microbiomes (IF 9.2) Pub Date : 2024-01-18 Pierre Lapaquette, Sébastien Terrat, Lil Proukhnitzky, Lucy Martine, Stéphane Grégoire, Bénédicte Buteau, Stéphanie Cabaret, Aurélie Rieu, Luis G. Bermúdez-Humarán, Pierre-Henry Gabrielle, Catherine Creuzot-Garcher, Olivier Berdeaux, Niyazi Acar, Marie-Agnès Bringer
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Nisin lantibiotic prevents NAFLD liver steatosis and mitochondrial oxidative stress following periodontal disease by abrogating oral, gut and liver dysbiosis npj Biofilms Microbiomes (IF 9.2) Pub Date : 2024-01-17 Ryutaro Kuraji, Changchang Ye, Chuanjiang Zhao, Li Gao, April Martinez, Yukihiro Miyashita, Allan Radaic, Pachiyappan Kamarajan, Charles Le, Ling Zhan, Helene Range, Masataka Sunohara, Yukihiro Numabe, Yvonne L. Kapila
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The gut microbiota modulate locomotion via vagus-dependent glucagon-like peptide-1 signaling npj Biofilms Microbiomes (IF 9.2) Pub Date : 2024-01-16 Tzu-Ting Lai, Yu-Hsuan Tsai, Chia-Wei Liou, Ching-Hsiang Fan, Yu-Tian Hou, Tzu-Hsuan Yao, Hsiao-Li Chuang, Wei-Li Wu
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Dietary emulsifier consumption accelerates type 1 diabetes development in NOD mice npj Biofilms Microbiomes (IF 9.2) Pub Date : 2024-01-06 Clara Delaroque, Benoit Chassaing
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Impact of the gut microbiome on immunological responses to COVID-19 vaccination in healthy controls and people living with HIV npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-12-20 Shilpa Ray, Aswathy Narayanan, Jan Vesterbacka, Ola Blennow, Puran Chen, Yu Gao, Giorgio Gabarrini, Hans-Gustaf Ljunggren, Marcus Buggert, Lokeshwaran Manoharan, Margaret Sällberg Chen, Soo Aleman, Anders Sönnerborg, Piotr Nowak
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Bacteroides is increased in an autism cohort and induces autism-relevant behavioral changes in mice in a sex-dependent manner npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-12-18 Julie Carmel, Nasreen Ghanayem, Rasha Mayouf, Natalia Saleev, Ipsita Chaterjee, Dmitriy Getselter, Evgeny Tikhonov, Sondra Turjeman, Monia Shaalan, Saleh Khateeb, Alla Kuzminsky, Netta Kvetniy-Ferdman, Tanya Kronos, Tali Bretler-Zager, Omry Koren, Evan Elliott
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A manifold-based framework for studying the dynamics of the vaginal microbiome npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-12-15 Mor Tsamir-Rimon, Elhanan Borenstein
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Spinal cord injury-induced gut dysbiosis influences neurological recovery partly through short-chain fatty acids npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-12-14 Yingli Jing, Degang Yang, Fan Bai, Qiuying Wang, Chao Zhang, Yitong Yan, Zihan Li, Yan Li, Zhiguo Chen, Jianjun Li, Yan Yu
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Cotton microbiome profiling and Cotton Leaf Curl Disease (CLCuD) suppression through microbial consortia associated with Gossypium arboreum npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-12-14 Rhea Aqueel, Ayesha Badar, Nazish Roy, Qandeel Mushtaq, Aimen Fatima Ali, Aftab Bashir, Umer Zeeshan Ijaz, Kauser Abdulla Malik
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Csu pili dependent biofilm formation and virulence of Acinetobacter baumannii npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-12-14 Irfan Ahmad, Aftab Nadeem, Fizza Mushtaq, Nikola Zlatkov, Muhammad Shahzad, Anton V. Zavialov, Sun Nyunt Wai, Bernt Eric Uhlin
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Population-level variation in gut bifidobacterial composition and association with geography, age, ethnicity, and staple food npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-12-12 Jing Lu, Li Zhang, Hao Zhang, Yutao Chen, Jianxin Zhao, Wei Chen, Wenwei Lu, Mingkun Li
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Impact of structurally diverse polysaccharides on colonic mucin O-glycosylation and gut microbiota npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-12-11 Tong Zhao, Yue Zhang, Linhua Nan, Qing Zhu, Shukai Wang, Yutao Xie, Xinling Dong, Cui Cao, Xiaoliang Lin, Yu Lu, Yuxia Liu, Linjuan Huang, Guiping Gong, Zhongfu Wang
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Genotoxic stress stimulates eDNA release via explosive cell lysis and thereby promotes streamer formation of Burkholderia cenocepacia H111 cultured in a microfluidic device npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-12-09 Zaira Heredia-Ponce, Eleonora Secchi, Masanori Toyofuku, Gabriela Marinova, Giovanni Savorana, Leo Eberl
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Periodontitis salivary microbiota exacerbates colitis-induced anxiety-like behavior via gut microbiota npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-12-07 Jun Qian, Jiangyue Lu, Shuyu Cheng, Xihong Zou, Qing Tao, Min Wang, Nannan Wang, Lichun Zheng, Wenzheng Liao, Yanfen Li, Fuhua Yan
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Recent advances in single-cell engineered live biotherapeutic products research for skin repair and disease treatment npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-12-08 Muhamad Aidilfitri Mohamad Roslan, Mohd Norfikri Omar, Nur Azlina Mohd Sharif, Nurul Hanun Ahmad Raston, Mohd Hafiz Arzmi, Hui-Min Neoh, Ahmad Bazli Ramzi
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Environmental determinants and demographic influences on global urban microbiomes, antimicrobial resistance and pathogenicity npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-12-07 Yang Chen, Xi Fu, Zheyuan Ou, Jiang Li, Simiao Lin, Yaoxuan Wu, Xuwei Wang, Yiqun Deng, Yu Sun
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Expansion microscopy applied to mono- and dual-species biofilms npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-12-05 David Valdivieso González, Josué Jara, Víctor G. Almendro-Vedia, Belén Orgaz, Iván López-Montero
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Survey of the infant male urobiome and genomic analysis of Actinotignum spp. npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-12-01 Seth A. Reasoner, Viktor Flores, Gerald Van Horn, Grace Morales, Leslie M. Peard, Benjamin Abelson, Carmila Manuel, Jessica Lee, Bailey Baker, Timothy Williams, Jonathan E. Schmitz, Douglass B. Clayton, Maria Hadjifrangiskou
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Vancomycin tolerance of adherent Staphylococcus aureus is impeded by nanospike-induced physiological changes npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-11-29 Andrew Hayles, Richard Bright, Ngoc Huu Nguyen, Vi Khanh Truong, Jonathan Wood, Dennis Palms, Jitraporn Vongsvivut, Dan Barker, Krasimir Vasilev
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Vaginal microbial dynamics and pathogen colonization in a humanized microbiota mouse model npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-11-20 Marlyd E. Mejia, Vicki Mercado-Evans, Jacob J. Zulk, Samantha Ottinger, Korinna Ruiz, Mallory B. Ballard, Stephanie W. Fowler, Robert A. Britton, Kathryn A. Patras
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Metaproteogenomic analysis of saliva samples from Parkinson’s disease patients with cognitive impairment npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-11-18 Muzaffer Arıkan, Tuğçe Kahraman Demir, Zeynep Yıldız, Özkan Ufuk Nalbantoğlu, Nur Damla Korkmaz, Nesrin H. Yılmaz, Aysu Şen, Mutlu Özcan, Thilo Muth, Lütfü Hanoğlu, Süleyman Yıldırım
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Daily fluctuation of colonic microbiome in response to nutrient substrates in a pig model npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-11-08 Hongyu Wang, Rongying Xu, Qiuke Li, Yong Su, Weiyun Zhu
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Inulin-enriched Megamonas funiformis ameliorates metabolic dysfunction-associated fatty liver disease by producing propionic acid npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-11-04 Xinyue Yang, Meihong Zhang, Yan Liu, Fuxiao Wei, Xin Li, Yuqing Feng, Xiaolu Jin, Dan Liu, Yuming Guo, Yongfei Hu
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Alterations in sea urchin (Mesocentrotus nudus) microbiota and their potential contributions to host according to barren severity npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-10-31 Joon-Young Park, Jae-Won Jo, Yu-Jeong An, Jin-Jae Lee, Bong-Soo Kim
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The therapeutic value of bifidobacteria in cardiovascular disease npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-10-30 Jia Tang, Yumeng Wei, Chao Pi, Wenwu Zheng, Ying Zuo, Peng Shi, Jinglin Chen, Linjin Xiong, Tao Chen, Huiyang Liu, Qianjiao Zhao, Suyu Yin, Wei Ren, Peng Cao, Nan Zeng, Ling Zhao
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Selective inhibition of the amyloid matrix of Escherichia coli biofilms by a bifunctional microbial metabolite npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-10-19 Estefanía Cordisco, María Inés Zanor, Diego Martín Moreno, Diego Omar Serra
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Native microbiome dominates over host factors in shaping the probiotic genetic evolution in the gut npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-10-14 Shuaiming Jiang, Chengcheng Zhang, Zhe Han, Wenyao Ma, Shunhe Wang, Dongxue Huo, Weipeng Cui, Qixiao Zhai, Shi Huang, Jiachao Zhang
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Dietary D-xylose promotes intestinal health by inducing phage production in Escherichia coli npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-10-11 Jie Hu, Yifan Wu, Luyuan Kang, Yisi Liu, Hao Ye, Ran Wang, Jinbiao Zhao, Guolong Zhang, Xilong Li, Junjun Wang, Dandan Han
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The accumulation and growth of Pseudomonas aeruginosa on surfaces is modulated by surface mechanics via cyclic-di-GMP signaling npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-10-10 Liyun Wang, Yu-Chern Wong, Joshua M. Correira, Megan Wancura, Chris J. Geiger, Shanice S. Webster, Ahmed Touhami, Benjamin J. Butler, George A. O’Toole, Richard M. Langford, Katherine A. Brown, Berkin Dortdivanlioglu, Lauren Webb, Elizabeth Cosgriff-Hernandez, Vernita D. Gordon
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Intracellular bacteria in cancer—prospects and debates npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-10-09 Lena Schorr, Marius Mathies, Eran Elinav, Jens Puschhof
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Digestive exophagy of biofilms by intestinal amoeba and its impact on stress tolerance and cytotoxicity npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-10-09 Eva Zanditenas, Meirav Trebicz-Geffen, Divya Kolli, Laura Domínguez-García, Einan Farhi, Liat Linde, Diego Romero, Matthew Chapman, Ilana Kolodkin-Gal, Serge Ankri
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The recovery of the microbial community after plaque removal depends on periodontal health status npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-10-07 Xiaoqing Li, Cheng Yu, Bing Zhang, Xiaogang Shan, Wenjun Mao, Zicheng Zhang, Chunyan Wang, Xiaoxia Jin, Jinfeng Wang, Hui Zhao
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Mitochondrial dysfunction promotes microbial composition that negatively impacts on ulcerative colitis development and progression npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-10-07 Ainize Peña-Cearra, Deguang Song, Janire Castelo, Ainhoa Palacios, Jose Luis Lavín, Mikel Azkargorta, Felix Elortza, Miguel Fuertes, Miguel Angel Pascual-Itoiz, Diego Barriales, Itziar Martín-Ruiz, Asier Fullaondo, Ana M. Aransay, Hector Rodríguez, Noah W. Palm, Juan Anguita, Leticia Abecia
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Microfluidic investigation of the impacts of flow fluctuations on the development of Pseudomonas putida biofilms npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-10-03 Guanju Wei, Judy Q. Yang
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Modulating biofilm can potentiate activity of novel plastic-degrading enzymes npj Biofilms Microbiomes (IF 9.2) Pub Date : 2023-10-03 Sophie A. Howard, Ronan R. McCarthy