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Phylogenomics of the leafhopper genus Neoaliturus Distant, 1918 (Hemiptera: Cicadellidae: Deltocephalinae) reveals genetically divergent lineages in the invasive beet leafhopper Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-04-04 Guy Sinaiko, Yanghui Cao, Christopher H. Dietrich
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Revision of the ‘Acanthephyra purpurea’ species complex (Crustacea: Decapoda), with an emphasis on species diversification in the Atlantic Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-04-02 Dmitry N. Kulagin, Anastasiia A. Lunina, Ulyana V. Simakova, Andrey A. Vedenin, Alexander L. Vereshchaka
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Applications of machine learning in phylogenetics Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-03-31 Yu K. Mo, Matthew W. Hahn, Megan L. Smith
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Phylogenetic analyses reveal insights into interdomain horizontal gene transfer of microbial lipases Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-03-31 Pedro Medeiros, Danilo Canato, Antonio Sergio Kimus Braz, Luciana Campos Paulino
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Phylogenomic analysis of Stylops reveals the evolutionary history of a Holarctic Strepsiptera radiation parasitizing wild bees Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-03-28 Meri Lähteenaro, Daniel Benda, Jakub Straka, Johan A.A. Nylander, Johannes Bergsten
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Deep divergences among inconspicuously colored clades of Epipedobates poison frogs Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-03-24 Karem López-Hervas, Juan C. Santos, Santiago R. Ron, Mileidy Betancourth-Cundar, David C. Cannatella, Rebecca D. Tarvin
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Phylogenomics and morphology of Celmisiinae (Asteraceae: Astereae): Taxonomic and evolutionary implications Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-03-19 Duncan A. Nicol, Patricio Saldivia, Tina C. Summerfield, Michael Heads, Janice M. Lord, Ei P. Khaing, Matthew J. Larcombe
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Identifying a potentially invasive population in the native range of a species: The enlightenment from the phylogeography of the yellow spotted stink bug, Erthesina fullo (Hemiptera: Pentatomidae) Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-03-16 Shujing Wang, Yanfei Li, Kun Jiang, Jiayue Zhou, Juhong Chen, Jingyu Liang, Arian Ndoni, Huaijun Xue, Zhen Ye, Wenjun Bu
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Integrative taxonomic analyses reveal that rapid genetic divergence drives Acropora speciation Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-03-15 Mao Furukawa, Seiya Kitanobo, Shun Ohki, Mariko M. Teramoto, Nozomi Hanahara, Masaya Morita
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Geomorphic impacts within Red River Fault and island shifting as witnessed by the phylogeography of the largest water strider Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-03-13 Xiaoya Sun, Qiqi Pan, Brad Hubley, Zhen Ye, Peng Zhang, Qiang Xie
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Machine learning approaches delimit cryptic taxa in a previously intractable species complex Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-03-12 Haley L.A. Heine, Shahan Derkarabetian, Rina Morisawa, Phoebe A. Fu, Nathaniel H.W. Moyes, Sarah L. Boyer
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Phylogenomics reveals Adeleorina are an ancient and distinct subgroup of Apicomplexa Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-03-12 Ina Na, Claudia Campos, Gordon Lax, Waldan K. Kwong, Patrick J. Keeling
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Shared phylogeographic patterns and environmental responses of co-distributed soybean pests: Insights from comparative phylogeographic studies of Riptortus pedestris and Riptortus linearis in the subtropics of East Asia Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-03-12 Siying Fu, Xin Chen, Kaibin Wang, Juhong Chen, Jiayue Zhou, Wenbo Yi, Minhua Lyu, Zhen Ye, Wenjun Bu
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Traditional multilocus phylogeny fails to fully resolve Palearctic ground squirrels (Spermophilus) relationships but reveals a new species endemic to West Siberia Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-03-11 Evgeniy Simonov, Natalia V. Lopatina, Sergey V. Titov, Anastasiya D. Ivanova, Oleg V. Brandler, Vadim L. Surin, Vera A. Matrosova, Alisa E. Dvilis, Nataliya V. Oreshkova, Svetlana Yu. Kapustina, Fedor N. Golenishchev, Oleg A. Ermakov
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Incomplete lineage sorting and gene flow within Allium (Amayllidaceae) Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-03-11 ZengZhu Zhang, Gang Liu, Minjie Li
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Phylogenomics of Afrotherian mammals and improved resolution of extant Paenungulata Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-03-07 Gaoming Liu, Qi Pan, Yichen Dai, Xiao Wang, Meng Li, Pingfen Zhu, Xuming Zhou
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Integrative phylogenetic, phylogeographic and morphological characterisation of the Unio crassus species complex reveals cryptic diversity with important conservation implications Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-03-05 M. Lopes-Lima, J. Geist, S. Egg, L. Beran, A. Bikashvili, B. Van Bocxlaer, A.E. Bogan, I.N. Bolotov, O.A. Chelpanovskaya, K. Douda, V. Fernandes, A. Gomes-dos-Santos, D.V. Gonçalves, M.E. Gürlek, N.A. Johnson, I. Karaouzas, Ü. Kebapçı, A.V. Kondakov, R. Kuehn, J. Lajtner, L. Mumladze, K.-O. Nagel, E. Neubert, M. Österling, J. Pfeiffer, V. Prié, N. Riccardi, J. Sell, LD. Schneider, S. Shumka, I. Sîrbu
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Origin and dispersal of the Mycobacterium tuberculosis Haarlem genotype: Clues from its phylogeographic landscape and human migration Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-03-04 I, g, o, r, , M, o, k, r, o, u, s, o, v
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Phylogeography and demographic history of macaques, fascicularis species group, in East Asia: Inferred from multiple genomic markers Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-02-23 Yanyan Zhou, Jundong Tian, Haijun Jiang, Mengya Han, Yuwei Wang, Jiqi Lu
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Integrating mitochondrial and nuclear genomic data to decipher the evolutionary history of Eubranchipus species in Japan Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-02-22 Takashi Kitano, Mitsutoshi Tabata, Norihito Takahashi, Kei Hirasawa, Seiki Igarashi, Yushi Hatanaka, Akira Ooyagi, Keiji Igarashi, Kazuo Umetsu
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Systematics and evolutionary dynamics of insect-fern interactions in the specialized fern-spore feeding Cuprininae (Lepidoptera, Stathmopodidae) Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-02-22 Zong-Yu Shen, Takeshi Terada, Jean-François Landry, Robert J.B. Hoare, Li-Yaung Kuo, Ming-Hsun Chou, Yu-Feng Hsu, Jen-Pan Huang
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Spatial genetic structure in European marbled newts revealed with target enrichment by sequence capture Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-02-20 Christos Kazilas, Christophe Dufresnes, James France, Konstantinos Kalaentzis, Iñigo Martínez-Solano, Manon C. de Visser, Jan W. Arntzen, Ben Wielstra
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Highly dynamic evolution of the chemosensory system driven by gene gain and loss across subterranean beetles Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-02-14 Pau Balart-García, Tessa M. Bradford, Perry G. Beasley-Hall, Slavko Polak, Steven J.B. Cooper, Rosa Fernández
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Molecular phylogeny and divergence time of Harpalyce (Leguminosae, Papilionoideae), a lineage with amphitropical diversification in seasonally dry forests and savannas Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-02-14 Wallace M.B. São-Mateus, Moabe Ferreira Fernandes, Luciano Paganucci de Queiroz, José Eduardo Meireles, Jomar Gomes Jardim, Alfonso Delgado-Salinas, Óscar Dorado, Haroldo Cavalcante de Lima, Rosa Rankin Rodríguez, Pedro Alejandro González Gutiérrez, Gwilym P. Lewis, Martin F. Wojciechowski, Domingos Cardoso
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Phylogenomic analyses sheds new light on the phylogeny and diversification of Corydalis DC. in Himalaya–Hengduan Mountains and adjacent regions Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-02-10 Yan-Yan Liu, Jia-Liang Cao, Sheng-Long Kan, Peng-Hang Wang, Jun-Li Wang, Ya-Nan Cao, Hong-Wei Wang, Jia-Mei Li
Phylogeny and divergence time estimation of . The blue bars corresponded to the 95% HPD (highest posterior density) credibility intervals of age estimates. Oli., Oligocene; Pal., Paleocene; P., Pliocene; Q., Quaternary. Bar chart after each species indicated the elevational range. The section classification was followed with Chen et al. (2023). The lowercase letters (a-m) following the species names
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Exploring the evolutionary dynamics of myrmecophytism: Perspectives from the Southeast Asian Macaranga ant-plant symbiosis Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-02-09 Nadi M. Dixit, Daniela Guicking
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Out of Place: Phylogenomics resolves the placement of Eurasian taxa and sheds light on origin of Thermopsideae in North America Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-02-09 Todd A. Farmer, Robert K. Jansen
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Phylogenomics of American pika (Ochotona princeps) lineage diversification Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-02-09 Danielle A. Schmidt, Kurt E. Galbreath, Michael A. Russello
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Phylogenomic reconstruction of Solenogastres (Mollusca, Aplacophora) informs hypotheses on body size evolution Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-02-09 Meghan K. Yap-Chiongco, Franziska S. Bergmeier, Nickellaus G. Roberts, Katharina M. Jörger, Kevin M. Kocot
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Once upon a fly: The biogeographical odyssey of Labrundinia (Chironomidae, Tanypodinae), an aquatic non-biting midge towards diversification Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-02-09 Fabio Laurindo da Silva, Bruno A.S. de Medeiros, Brian D. Farrell
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Under the hood: Phylogenomics of hooded tick spiders (Arachnida, Ricinulei) uncovers discordance between morphology and molecules Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-02-08 Shoyo Sato, Shahan Derkarabetian, Alejandro Valdez-Mondragón, Abel Pérez-González, Ligia R. Benavides, Savel R. Daniels, Gonzalo Giribet
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To and fro in the archipelago: Repeated inter-island dispersal and New Guinea’s orogeny affect diversification of Delias, the world’s largest butterfly genus Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-02-05 Weijun Liang, Renato Nunes, Jing V. Leong, Ana Paula S. Carvalho, Chris J. Müller, Michael F. Braby, Olivier Pequin, Sugihiko Hoshizaki, Sadaharu Morinaka, Djunijanti Peggie, Jade Aster T. Badon, Alma B. Mohagan, Ethan Beaver, Yu-Feng Hsu, Yutaka Inayoshi, Alexander Monastyrskii, Petr Vlasanek, Emmanuel F.A. Toussaint, Hugo A. Benítez, Akito Y. Kawahara, Naomi E. Pierce, David J. Lohman
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Phylogenetic insights into Central European Chorthippus and Pseudochorthippus (Orthoptera: Acrididae) species using ddRADseq data Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-01-13 Robin Schmidt, Christophe Dufresnes, Anton Krištín, Sven Künzel, Miguel Vences, Oliver Hawlitschek
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Erratum to “Disentangling historical relationships within Poeciliidae (Teleostei: Cyprinodontiformes) using ultraconserved elements” [Mol. Phylogenet. Evol. 190 (2024) 107965] Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-01-12 Sheila Rodríguez-Machado, Diego J. Elías, Caleb D. McMahan, Anna Gruszkiewicz-Tolli, Kyle R. Piller, Prosanta Chakrabarty
Abstract not available
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Abundant incongruence in a clade endemic to a biodiversity hotspot: Phylogenetics of the scrub mint clade (Lamiaceae) Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-01-08 Andre A. Naranjo, Christine E. Edwards, Matthew A. Gitzendanner, Douglas E. Soltis, Pamela S. Soltis
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On the origin of bird’s nest fungi: Phylogenomic analyses of fungi in the Nidulariaceae (Agaricales, Basidiomycota) Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-01-07 Nattapol Kraisitudomsook, Steven Ahrendt, Robert Riley, Kurt LaButti, Anna Lipzen, Chris Daum, Kerrie Barry, Igor V. Grigoriev, Teppo Rämä, Francis Martin, Matthew E. Smith
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Stochastic processes and changes in evolutionary rate are associated with diversification in a lineage of tropical hard pines (Pinus) Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-01-07 Jorge Cruz-Nicolás, Juan Pablo Jaramillo-Correa, David S. Gernandt
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The role of introgressive hybridization in shaping the geographically isolated gene pools of wax palm populations (genus Ceroxylon) Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-01-07 Sara Carvalho-Madrigal, María José Sanín
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Diversification of the terrestrial frog genus Anomaloglossus (Anura, Aromobatidae) in the Guiana Shield proceeded from highlands to lowlands, with successive loss and reacquisition of endotrophy Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2024-01-03 Jean-Pierre Vacher, Philippe J.R. Kok, Miguel Trefaut Rodrigues, Albertina Lima, Tomas Hrbek, Fernanda P. Werneck, Sophie Manzi, Christophe Thébaud, Antoine Fouquet
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When colors mislead: Genomics and bioacoustics prompt re-classification of Asian flycatcher radiation (Aves: Niltavinae) Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2023-12-29 Kritika M. Garg, Chyi Yin Gwee, Balaji Chattopadhyay, Nathaniel S. Ng, Dewi M. Prawiradilaga, Gabriel David, Jérôme Fuchs, , Jonathan Martinez, Urban Olsson, , Sophea Chhin, Per Alström, Fumin Lei, Frank E. Rheindt
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Comparative genomic analysis of chemosensory-related gene families in gastropods Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2023-12-22 Johnma José Rondón, Vadim A. Pisarenco, José Ramón Pardos-Blas, Alejandro Sánchez-Gracia, Rafael Zardoya, Julio Rozas
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Molecular phylogeny of deep-sea blind lobsters of the family Polychelidae (Decapoda: Polychelida), with implications for the origin and evolution of these “living fossils” Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2023-12-23 Su-Ching Chang, Shane T. Ahyong, Ling-Ming Tsang
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The genomic diversity of the Eliurus genus in northern Madagascar with a putative new species Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2023-12-20 Gabriele Maria Sgarlata, Emmanuel Rasolondraibe, Jordi Salmona, Barbara Le Pors, Tantely Ralantoharijaona, Ando Rakotonanahary, Fabien Jan, Sophie Manzi, Amaia Iribar, John Rigobert Zaonarivelo, Nicole Volasoa Andriaholinirina, Solofonirina Rasoloharijaona, Lounès Chikhi
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How long have we been mistaken? Multi-tools shedding light into the systematics of the widespread deep-water genus Madrepora Linnaeus, 1758 (Scleractinia) Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2023-12-17 Kátia C.C. Capel, Carla Zilberberg, Raphael M. Carpes, Cheryl L. Morrison, Claudia F. Vaga, Andrea M. Quattrini, Randolph ZB Quek, Danwei Huang, Stephen D. Cairns, Marcelo V. Kitahara
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Single cell transcriptomics reveals UAR codon reassignment in Palmarella salina (Metopida, Armophorea) and confirms Armophorida belongs to APM clade Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2023-12-12 Johana Rotterová, Tomáš Pánek, Eric D. Salomaki, Michael Kotyk, Petr Táborský, Martin Kolísko, Ivan Čepička
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Systematics of deep-sea starfish order Brisingida (Echinodermata: Asteroidea), with a revised classification and assessments of morphological characters Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2023-12-14 Ruiyan Zhang, Marine Fau, Christopher Mah, Marc Eléaume, Dongsheng Zhang, Yadong Zhou, Bo Lu, Chunsheng Wang
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Phylogenomics and species delimitation of an abundant and little-studied Amazonian forest spiny rat Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2023-12-12 Jeronymo Dalapicolla, Joyce Rodrigues do Prado, L. Lacey Knowles, Alexandre Reis Percequillo
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Phylogenomic data reveal three new families of poorly studied Solifugae (camel spiders) Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2023-12-10 Siddharth S. Kulkarni, Takeshi Yamasaki, Luong Thi Hong Phung, Nanguei Karuaera, Savel R. Daniels, Efrat Gavish-Regev, Prashant P. Sharma
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A combined phylogenetic strategy illuminates the evolution of Goniodorididae nudibranchs (Mollusca, Gastropoda, Heterobranchia) Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2023-12-09 Sofía Paz-Sedano, Juan Moles, Dimitri Smirnoff, Terrence M. Gosliner, Marta Pola
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Facilitating taxonomy and phylogenetics: An informative and cost-effective protocol integrating long amplicon PCRs and third-generation sequencing Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2023-12-09 Domagoj Gajski, Jonas O. Wolff, Anja Melcher, Sven Weber, Stefan Prost, Henrik Krehenwinkel, Susan R. Kennedy
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Out of the ancient lake: Multiple riverine colonizations and diversification of the freshwater snails in the genus Semisulcospira around Lake Biwa Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2023-12-09 Kohei Morita, Takumi Saito, Takeru Uechi, Naoto Sawada, Osamu Miura
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Hidden in the sand: Phylogenomics unravel an unexpected evolutionary history for the desert-adapted vipers of the genus Cerastes Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2023-11-29 Gabriel Mochales-Riaño, Bernat Burriel-Carranza, Margarida Isabel Barros, Guillermo Velo-Antón, Adrián Talavera, Loukia Spilani, Héctor Tejero-Cicuéndez, Pierre-André Crochet, Alberto Piris, Luis García-Cardenete, Salem Busais, Johannes Els, Mohammed Shobrak, José Carlos Brito, Jiří Šmíd, Salvador Carranza, Fernando Martínez-Freiría
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Skeleton phylogeny reconstructed with transcriptomes for the tribe Drosophilini (Diptera: Drosophilidae) Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2023-11-25 Yosuke Seto, Yuma Iwasaki, Yoshitaka Ogawa, Koichiro Tamura, Masanori J. Toda
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Out of the desert: Paleoclimatic changes drove the diversification of arid-adapted Ocymyrmex ants in southern Africa Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2023-11-24 Nokuthula Mbanyana, Bonnie B. Blaimer, Johannes J. Le Roux, Simon van Noort, Seán G. Brady, Theresa C. Wossler
A highly endemic ant fauna is found in the arid regions of southern Africa, including species in the genus Ocymyrmex. This genus of ants has higher species richness in the western arid regions of southern Africa compared to tropical and subtropical parts of the continent. The processes that have produced these patterns of diversity and distribution of arid adapted ants in southern Africa have never
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Evolutionary history of a cold-adapted limnephilid caddisfly: Effects of climate change and topography on genetic structure Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2023-11-23 Hirohisa Suzuki, Masaki Takenaka, Koji Tojo
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Phylogenomic analyses reveal a single deep-water colonisation in Patellogastropoda Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2023-11-23 Ying Qi, Zhaoyan Zhong, Xu Liu, Xing He, Yadong Zhou, Lili Zhang, Chong Chen, Katrin Linse, Jian-Wen Qiu, Jin Sun
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Coupling DNA barcodes and exon-capture to resolve the phylogeny of Turridae (Gastropoda, Conoidea) Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2023-11-23 Paul Zaharias, Yuri I. Kantor, Alexander E. Fedosov, Nicolas Puillandre
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Relicts in the mist: Two new frog families, genera and species highlight the role of Pantepui as a biodiversity museum throughout the Cenozoic Mol. Phylogenet. Evol. (IF 4.1) Pub Date : 2023-11-22 Antoine Fouquet, Philippe J.R. Kok, Renato Sousa Recoder, Ivan Prates, Agustin Camacho, Sergio Marques-Souza, José Mario Ghellere, Roy W. McDiarmid, Miguel Trefaut Rodrigues