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在线工具

分子生物学常用在线工具:

1. BLAST: Basic Local Alignment Search Tool 

2. 载体家载体设计在线软件 

3. WebLab: (a multifunctional bioinformatics analysis platform integrating diversified tools with unified)

4. REVA (Repository for Expression-modulating VAriants) is a database specifically designed for storing experimentally validated variants.

5. SWISS-MODEL (Fully automated protein structure homology-modelling server)

6. Ensembl 

7. GeneCards®: The Human Gene Database 

8. hTFtarget 

9. PASTAA (TFs) 

10. Human TFDB 

11. Guo lab 


细胞生物学常用在线工具:

1. Cellosaurus , a knowledge resource on cell lines 

2. CCLE 


动物模型常用在线工具:

1. 小鼠模型库 


分子互作常用在线工具:

1. The openPIP Project (The Open-source Protein Interaction Platform, openPIP) 

2. Cytoscape (Cytoscape is an open source software platform) 

3. STRING (Protein-Protein Interaction Networks Functional Enrichment Analysis)

4. Tartaglialab (catRAPID, CROSS, PAnDA )


组学在线工具:

1. GEPIA (Gene Expression Profiling Interactive Analysis) 

2. KM plotter (The Kaplan Meier plotter is capable to assess the correlation between the expression of genes and survival in 25k+ samples from 21 tumor types ) 

3. Gene Set Enrichment Analysis (GSEA) 

4. dbDEMC (database of Differentially Expressed MiRNAs in human Cancers) 

5. The Human Disease Methylation Database Version 3.0 

6. TIMER 2.0 is a comprehensive resource for systematical analysis of immune infiltrates across diverse cancer types 

7. SRAMP (A sequence-based N6-methyladenosine (m6A) modification site predictor) 

8. Venny 2.1 (An interactive tool for comparing lists using Venn Diagrams with support for up to 4 sets) 

9. Venn Diagrams (With this tool you can calculate the intersection(s) of list of elements at maximum 30 lists)

10. LinkedOmics (publicly available portal that includes multi-omics data from all 32 TCGA Cancer types and 10 Clinical Proteomics Tumor Analysis Consortium (CPTAC) cancer cohorts

11. The Human Protein Atlas 

12.  iProX (iProX is an integrated proteome resources center in China, which is built to accelerate the worldwide data sharing in proteomics) 


非编码RNA在线工具:

1. miRBase: the microRNA database 

2. TargetScan predicts biological targets of miRNAs 

3. CPC2 (The CPC sever accepts RNA transcript sequences as input, and outputs assessed protein-coding potential of the transcripts)

4. CPC1.0 (The CPC sever accepts RNA transcript sequences as input, and outputs assessed protein-coding potential of the transcripts)

5. RNAcentral: The non-coding RNA sequence database 

6. LNCipedia: A comprehensive compendium of human long non-coding RNAs 



相分离在线工具:

1. D2P2 Database of Disordered Protein Predictions (A community resource for pre-computed disorder predictions on a large library of proteins from completely-sequenced genomes) 

2.  PLAAC (searches protein sequences to identify probable prion subsequences using a hidden-Markov model (HMM) algorithm) 

3. 



综合在线工具:

1. Database Commons: (A curated catalog of worldwide biological databases)