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Host population crashes disrupt the diversity of associated marine microbiomes Environ. Microbiol. (IF 5.1) Pub Date : 2024-03-23 William S. Pearman, Sergio E. Morales, Felix Vaux, Neil J. Gemmell, Ceridwen I. Fraser
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Out of sight, but not out of season: Nitrifier distributions and population dynamics in a large oligotrophic lake Environ. Microbiol. (IF 5.1) Pub Date : 2024-03-22 Logan M. Peoples, Miranda H. Seixas, Kate A. Evans, Evan M. Bilbrey, John R. Ranieri, Tyler H. Tappenbeck, John E. Dore, Adam Baumann, Matthew J. Church
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A single Prochlorococcus ecotype dominates the tropical Bay of Bengal with ultradian growth Environ. Microbiol. (IF 5.1) Pub Date : 2024-03-22 Jonathan Grone, Camille Poirier, Kathleen Abbott, Fabian Wittmers, Gualtiero Spiro Jaeger, Amala Mahadevan, Alexandra Z. Worden
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How good are global DNA‐based environmental surveys for detecting all protist diversity? Arcellinida as an example of biased representation Environ. Microbiol. (IF 5.1) Pub Date : 2024-03-21 Fernando Useros, Iván García‐Cunchillos, Nicolas Henry, Cédric Berney, Enrique Lara
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Investigating the inoculum dynamics of Cladosporium on the surface of raspberry fruits and in the air Environ. Microbiol. (IF 5.1) Pub Date : 2024-03-21 Lauren Helen Farwell, Matevz Papp‐Rupar, Greg Deakin, Naresh Magan, Xiangming Xu
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Phototrophic Fe(II) oxidation by Rhodopseudomonas palustris TIE‐1 in organic and Fe(II)‐rich conditions Environ. Microbiol. (IF 5.1) Pub Date : 2024-03-20 Verena Nikeleit, Markus Maisch, James M. Byrne, Caroline Harwood, Andreas Kappler, Casey Bryce
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Employing a triple metabarcoding approach to differentiate active, dormant and dead microeukaryotes in sediments Environ. Microbiol. (IF 5.1) Pub Date : 2024-03-19 Huiwen Deng, Cui He, Alexandra Z. Worden, Jun Gong
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Nontarget impacts of neonicotinoids on nectar‐inhabiting microbes Environ. Microbiol. (IF 5.1) Pub Date : 2024-03-18 Jacob M. Cecala, Rachel L. Vannette
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Differential structure and function of phosphorus‐mineralizing microbial communities in organic and upper mineral soil horizons across a temperate rainforest chronosequence Environ. Microbiol. (IF 5.1) Pub Date : 2024-03-14 Kari E. Dunfield, Eduardo K. Mitter, Alan E. Richardson, Jonathan R. Gaiero, Kamini Khosla, Xiaodong Chen, Andrew Wells, Philip M. Haygarth, Leo M. Condron
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Bacterial rarity in a subarctic stream network: Biodiversity patterns, assembly mechanisms and types of rarity Environ. Microbiol. (IF 5.1) Pub Date : 2024-03-14 Jacqueline Malazarte, Timo Muotka, Jussi Jyväsjärvi, Kaisa Lehosmaa, Kaisa‐Riikka Mustonen, Laura Tarvainen, Kaisa‐Leena Huttunen
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Environmental filtering governs consistent vertical zonation in sedimentary microbial communities across disconnected mountain lakes Environ. Microbiol. (IF 5.1) Pub Date : 2024-03-13 Jordan M. Von Eggers, Nathan I. Wisnoski, John W. Calder, Eric Capo, Dulcinea V. Groff, Amy C. Krist, Bryan Shuman
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Aphid populations are frequently infected with facultative endosymbionts Environ. Microbiol. (IF 5.1) Pub Date : 2024-03-09 S. Helena Donner, Marijn Slingerland, Mariska M. Beekman, Arthur Comte, Marcel Dicke, Bas J. Zwaan, Bart A. Pannebakker, Eveline C. Verhulst
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Bacterial community shifts occur primarily through rhizosphere expansion in response to subsoil amendments Environ. Microbiol. (IF 5.1) Pub Date : 2024-03-08 Joshua J. Vido, Xiaojuan Wang, Peter W. G. Sale, Corinne Celestina, Anya E. Shindler, Helen L. Hayden, Caixian Tang, Jennifer L. Wood, Ashley E. Franks
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Active coexistence of the novel gammaproteobacterial methanotroph ‘Ca.Methylocalor cossyra’ CH1 and verrucomicrobial methanotrophs in acidic, hot geothermal soil Environ. Microbiol. (IF 5.1) Pub Date : 2024-03-08 Changqing Liu, Rob A. Schmitz, Arjan Pol, Carmen Hogendoorn, Daniël Verhagen, Stijn H. Peeters, Theo A. van Alen, Geert Cremers, Rob A. Mesman, Huub J. M. Op den Camp
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Comparative genomics reveals the adaptation of ammonia‐oxidising Thaumarchaeota to arid soils Environ. Microbiol. (IF 5.1) Pub Date : 2024-03-08 Chaonan Li, Haijun Liao, Lin Xu, Changting Wang, Minjie Yao, Junming Wang, Xiangzhen Li
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Wolbachia strain wAlbB shows favourable characteristics for dengue control use in Aedes aegypti from Burkina Faso Environ. Microbiol. (IF 5.1) Pub Date : 2024-03-07 Maria Vittoria Mancini, Shivan M. Murdochy, Etienne Bilgo, Thomas H. Ant, Daniel Gingell, Edounou Jacques Gnambani, Anna‐Bella Failloux, Abdoulaye Diabate, Steven P. Sinkins
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The ectomycorrhizal fungus Paxillus ammoniavirescens influences the effects of salinity on loblolly pine in response to potassium availability Environ. Microbiol. (IF 5.1) Pub Date : 2024-03-07 Benjamin D. Rose, Marissa A. Dellinger, Clancy P. Larmour, Mira I. Polishook, Maria I. Higuita‐Aguirre, Summi Dutta, Rachel L. Cook, Sabine D. Zimmermann, Kevin Garcia
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Gazing into the abyss: A glimpse into the diversity, distribution, and behaviour of heterotrophic protists from the deep‐sea floor Environ. Microbiol. (IF 5.1) Pub Date : 2024-03-06 Lawrence Rudy Cadena, Virginia Edgcomb, Julius Lukeš
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Distinct bacterial succession and functional response to alginate in the South, Equatorial, and North Pacific Ocean Environ. Microbiol. (IF 5.1) Pub Date : 2024-02-29 John Paul Balmonte, Helge‐Ansgar Giebel, Carol Arnosti, Meinhard Simon, Matthias Wietz
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Annual recurrence of prokaryotic climax communities in shallow waters of the North Mediterranean Environ. Microbiol. (IF 5.1) Pub Date : 2024-02-29 Mauro Celussi, Vincenzo Manna, Elisa Banchi, Viviana Fonti, Matteo Bazzaro, Vesna Flander‐Putrle, Katja Klun, Martina Kralj, Neža Orel, Tinkara Tinta
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How to identify and quantify the members of the Bacillus genus? Environ. Microbiol. (IF 5.1) Pub Date : 2024-02-21 Xinming Xu, Ákos T. Kovács
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Calcium and the ecology of photosynthesis in purple sulfur bacteria Environ. Microbiol. (IF 5.1) Pub Date : 2024-02-23 Michael T. Madigan, W. Matthew Sattley, Yukihiro Kimura, Zheng‐Yu Wang‐Otomo
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Soil microbial communities along elevational gradients in the Madrean Sky Islands Environ. Microbiol. (IF 5.1) Pub Date : 2024-02-23 Adalee Martinez, Gabriele Schiro, Albert Barberán
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Acetic acid stress response of the acidophilic sulfate reducer Acididesulfobacillus acetoxydans Environ. Microbiol. (IF 5.1) Pub Date : 2024-02-14 Reinier A. Egas, Diana X. Sahonero-Canavesi, Nicole J. Bale, Michel Koenen, Çağlar Yildiz, Laura Villanueva, Diana Z. Sousa, Irene Sánchez-Andrea
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Viral communities in millipede guts: Insights into the diversity and potential role in modulating the microbiome Environ. Microbiol. (IF 5.1) Pub Date : 2024-02-14 Julius Eyiuche Nweze, Johannes Sergej Schweichhart, Roey Angel
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Taxonomic and metabolic diversity of Actinomycetota isolated from faeces of a 28,000-year-old mammoth Environ. Microbiol. (IF 5.1) Pub Date : 2024-02-14 Doris A. van Bergeijk, Hannah E. Augustijn, Somayah S. Elsayed, Joost Willemse, Victor J. Carrión, Chao Du, Mia Urem, Lena V. Grigoreva, Maksim Y. Cheprasov, Semyon Grigoriev, Hans Jansen, Bas Wintermans, Andries E. Budding, Herman P. Spaink, Marnix H. Medema, Gilles P. van Wezel
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Adding experimental precision to the realism of field observations: Plant communities structure bacterial communities in a glacier forefield Environ. Microbiol. (IF 5.1) Pub Date : 2024-02-14 Xie He, Maximilian Hanusch, Laura Böll, Alexander Lach, Tobias Seifert, Robert R. Junker
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Microbiology of Big Soda Lake, a multi-extreme meromictic volcanic crater lake in the Nevada desert Environ. Microbiol. (IF 5.1) Pub Date : 2024-02-13 Hengameh H. Soufi, Daniel Tran, Stilianos Louca
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Decoding the RNA virome of the tree parasite Armillaria provides new insights into the viral community of soil-borne fungi Environ. Microbiol. (IF 5.1) Pub Date : 2024-02-13 Wajeeha Shamsi, Renate Heinzelmann, Sven Ulrich, Hideki Kondo, Carolina Cornejo
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Dissecting host-microbiome interaction effects on phytoplankton microbiome composition and diversity Environ. Microbiol. (IF 5.1) Pub Date : 2024-02-13 Jinny Wu Yang, Vincent J. Denef
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Archaeal blooms and busts in an estuarine time series Environ. Microbiol. (IF 5.1) Pub Date : 2024-02-07 Justin T. Guider, Kristin M. Yoshimura, Kaleigh R. Block, Jennifer F. Biddle, Sunita R. Shah Walter
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The Arctic summer microbiome across Fram Strait: Depth, longitude, and substrate concentrations structure microbial diversity in the euphotic zone Environ. Microbiol. (IF 5.1) Pub Date : 2024-01-24 Matthias Wietz, Anja Engel, Simon Ramondenc, Matomo Niwano, Wilken-Jon von Appen, Taylor Priest, Anabel von Jackowski, Katja Metfies, Christina Bienhold, Antje Boetius
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The exometabolome of microbial communities inhabiting bare ice surfaces on the southern Greenland Ice Sheet Environ. Microbiol. (IF 5.1) Pub Date : 2024-01-23 Eva L. Doting, Marie B. Jensen, Elisa K. Peter, Lea Ellegaard-Jensen, Martyn Tranter, Liane G. Benning, Martin Hansen, Alexandre M. Anesio
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Pulsed inputs of high molecular weight organic matter shift the mechanisms of substrate utilisation in marine bacterial communities Environ. Microbiol. (IF 5.1) Pub Date : 2024-01-22 Sarah Brown, C. Chad Lloyd, Greta Giljan, Sherif Ghobrial, Rudolf Amann, Carol Arnosti
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Correction to “Exploring the onset of B12-based mutualisms using a recently evolved Chlamydomonas auxotroph and B12-producing bacteria” Environ. Microbiol. (IF 5.1) Pub Date : 2024-01-19
Bunbury, F., Deery, E., Sayer, A.P., Bhardwaj, V., Harrison, E.L., Warren, M.J. et al. (2018) Exploring the onset of B12-based mutualisms using a recently evolved Chlamydomonas auxotroph and B12-producing bacteria. Environmental Microbiology, 24, 3134–3147. In Figure 2A, the panel header ‘metE7 density (cells/mL)’ is incorrect. This should have read: ‘Algal density (cells/mL)’. In Figure 5C, the panel
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A novel soluble di-iron monooxygenase from the soil bacterium Solimonas soli Environ. Microbiol. (IF 5.1) Pub Date : 2024-01-17 Sui Nin Nicholas Yang, Victoria Haritos, Michael A. Kertesz, Nicholas V. Coleman
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Coupling pathway prediction and fluorescence spectroscopy to assess the impact of auxiliary substrates on micropollutant biodegradation Environ. Microbiol. (IF 5.1) Pub Date : 2024-01-17 Anna-Ricarda Schittich, Kathrin Fenner, Colin A. Stedmon, Jianxin Xu, Ursula S. McKnight, Barth F. Smets
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Declining salinity and increasing temperature reduce the diversity and resilience of benthic diatoms Environ. Microbiol. (IF 5.1) Pub Date : 2024-01-14 Leena Virta, Per Hedberg
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The motility and chemosensory systems of Rhizobium leguminosarum, their role in symbiosis, and link to PTSNtr regulation Environ. Microbiol. (IF 5.1) Pub Date : 2024-01-12 Samuel T. N. Aroney, Francesco Pini, Celia Kessler, Philip S. Poole, Carmen Sánchez-Cañizares
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Searching for microbial contribution to micritization of shallow marine sediments Environ. Microbiol. (IF 5.1) Pub Date : 2024-01-12 Elisa Garuglieri, Ramona Marasco, Charlene Odobel, Viswasanthi Chandra, Thomas Teillet, Camila Areias, Mónica Sánchez-Román, Volker Vahrenkamp, Daniele Daffonchio
Micritization is an early diagenetic process that gradually alters primary carbonate sediment grains through cycles of dissolution and reprecipitation of microcrystalline calcite (micrite). Typically observed in modern shallow marine environments, micritic textures have been recognized as a vital component of storage and flow in hydrocarbon reservoirs, attracting scientific and economic interests.
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Microplastic fibres affect soil fungal communities depending on drought conditions with consequences for ecosystem functions Environ. Microbiol. (IF 5.1) Pub Date : 2024-01-10 Y. M. Lozano, J. F. Dueñas, C. Zordick, M. C. Rillig
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Persistence of heterologous Flavobacterium psychrophilum genetic variants in microcosms simulating fish farm and hatchery environments Environ. Microbiol. (IF 5.1) Pub Date : 2024-01-09 Christopher Knupp, Esteban Soto, Douglas R. Call, Thomas P. Loch
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Manipulation of the seagrass-associated microbiome reduces disease severity Environ. Microbiol. (IF 5.1) Pub Date : 2024-01-09 Olivia J. Graham, Emily M. Adamczyk, Siobhan Schenk, Phoebe Dawkins, Samantha Burke, Emily Chei, Kaitlyn Cisz, Sukanya Dayal, Jack Elstner, Arjun Lev Pillai Hausner, Taylor Hughes, Omisha Manglani, Miles McDonald, Chloe Mikles, Anna Poslednik, Audrey Vinton, Laura Wegener Parfrey, C. Drew Harvell
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Interaction effects of pH and land cover on soil microbial diversity are climate-dependent Environ. Microbiol. (IF 5.1) Pub Date : 2024-01-09 Maëva Labouyrie, Cristiano Ballabio, Ferran Romero, Panos Panagos, Arwyn Jones, Leho Tedersoo, Marcel G. A. van der Heijden, Alberto Orgiazzi
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Aedes aegypti gut transcriptomes respond differently to microbiome transplants from field-caught or laboratory-reared mosquitoes Environ. Microbiol. (IF 5.1) Pub Date : 2024-01-08 Shivanand Hegde, Laura E. Brettell, Shannon Quek, Kayvan Etebari, Miguel A. Saldaña, Sassan Asgari, Kerri L. Coon, Eva Heinz, Grant L. Hughes
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Wolbachia effects on thermal preference of natural Drosophila melanogaster are influenced by host genetic background, Wolbachia type, and bacterial titer Environ. Microbiol. (IF 5.1) Pub Date : 2024-01-08 Anton Strunov, Charlotte Schönherr, Martin Kapun
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Metagenomic and proteomic insights into the self-adaptive cell surface hydrophobicity of Sphingomonas sp. strain PAH02 reducing the migration of cadmium-phenanthrene co-pollutant in rice Environ. Microbiol. (IF 5.1) Pub Date : 2024-01-06 Shengwei Yi, Zhongnan Zhu, Feng Li, Lizhong Zhu, Chen Wu, Fei Ge, Xionghui Ji, Jiang Tian
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N-acetyl-β-hexosaminidase activity is important for chitooligosaccharide metabolism and biofilm formation in Burkholderia pseudomallei Environ. Microbiol. (IF 5.1) Pub Date : 2024-01-04 Clare L. Moran, Aleksandra Debowski, Alice Vrielink, Keith Stubbs, Mitali Sarkar-Tyson
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Microbial diversity and abundance vary along salinity, oxygen, and particle size gradients in the Chesapeake Bay Environ. Microbiol. (IF 5.1) Pub Date : 2024-01-03 Jacob A. Cram, Ashley Hollins, Alexandra J. McCarty, Grace Martinez, Minming Cui, Maya L. Gomes, Clara A. Fuchsman
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Novel evolutionary insights on the interactions of the Holosporales (Alphaproteobacteria) with eukaryotic hosts from comparative genomics Environ. Microbiol. (IF 5.1) Pub Date : 2024-01-03 Michele Giovannini, Giulio Petroni, Michele Castelli
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Not all parents are the same: Diverse strategies of symbiont transmission in seaweeds Environ. Microbiol. (IF 5.1) Pub Date : 2023-12-27 Syukur Syukur, Joanna Richmond, Marwan E. Majzoub, Jadranka Nappi, Suhelen Egan, Torsten Thomas
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Microbes and microplastics: Community shifts along an urban coastal contaminant gradient Environ. Microbiol. (IF 5.1) Pub Date : 2023-12-27 Cody E. Garrison, Maria G. Pachiadaki, Sammer Soliman, Anthony Helfrich, Gordon T. Taylor
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An iron fist in a velvet glove: The cooperation of a novel pyoverdine from Pseudomonas donghuensis P482 with 7-hydroxytropolone is pivotal for its antibacterial activity Environ. Microbiol. (IF 5.1) Pub Date : 2023-12-27 Sylwia Jafra, Magdalena Jabłońska, Tomasz Maciąg, Marta Matuszewska, Marcin Borowicz, Michał Prusiński, Wioletta Żmudzińska, Marcel Thiel, Paulina Czaplewska, Dorota M. Krzyżanowska, Robert Czajkowski
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Mock microbial community meta-analysis using different trimming of amplicon read lengths Environ. Microbiol. (IF 5.1) Pub Date : 2023-12-27 Diana Haider, Michael W. Hall, Julie LaRoche, Robert G. Beiko
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Biological nitrogen fixation, diversity and community structure of diazotrophs in two mosses in 25 temperate forests Environ. Microbiol. (IF 5.1) Pub Date : 2023-12-26 Christina Groß, Shakhawat Hossen, Sebastian Dittrich, Klaus-Holger Knorr, Werner Borken, Matthias Noll
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Core taxa underpin soil microbial community turnover during secondary succession Environ. Microbiol. (IF 5.1) Pub Date : 2023-12-26 Tord Ranheim Sveen, Maria Viketoft, Jan Bengtsson, Mohammad Bahram
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Microbiome mediating methane and nitrogen transformations in a subterranean estuary Environ. Microbiol. (IF 5.1) Pub Date : 2023-12-19 Sebastian Euler, Luke C. Jeffrey, Damien T. Maher, Scott G. Johnston, Ryo Sugimoto, Douglas R. Tait
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The fitness benefit of pyoverdine cross-feeding by Pseudomonas protegens Pf-5 Environ. Microbiol. (IF 5.1) Pub Date : 2023-12-14 Parker Smith, Martin Schuster
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Altering environmental conditions induce shifts in simulated deep terrestrial subsurface bacterial communities—Secretion of primary and secondary metabolites Environ. Microbiol. (IF 5.1) Pub Date : 2023-12-14 Merja Herzig, Tuulia Hyötyläinen, Gianni F. Vettese, Gareth T. W. Law, Taavi Vierinen, Malin Bomberg