Observations of kilometer-scale turbulent fluxes of sensible (H) and latent heat (LE) are required for the validation of flux estimate algorithms from satellite remote-sensing data and the development of parameterization schemes in the hydro-meteorological models. Since 2019, two sets of Optical and Microwave scintillometer (OMS) systems have been operated in the Heihe River Basin of northwestern China, one on an alpine grassland of upper reaches, another on an oasis cropland of middle reaches, to measure both the areal H and LE. Combined with the observations of eddy-covariance (EC) and meteorological tower systems in both sites, an improved procedure for OMS data processing is proposed. The newly proposed procedure especially improves the preprocessing of raw scintillation data, properly uses the current probably better Lüdi et al. (2005) method in deriving meteorological structure parameters, and chooses the coefficients of similarity functions by Kooijmans and Hartogensis (2016) in calculating fluxes. Evaluated with the results of rather homogeneous grassland, the area-averaged H and LE over the heterogeneous oasis are then determined. Estimates of H and LE agree reasonably well with those obtained from EC in most cases. However, the most interesting is that LE over the oasis during the early crop growing stages is clearly larger than that of EC; while both agree well during the longer crop grown periods. Footprint analysis shows that, compared with EC, the OMS has clearly larger source area that contains a slight area of orchard and shelterbelts distributed near the light path, leading to larger LE during the early stages of crop growth. The area-averaged evapotranspiration (ET) over the oasis is then analyzed more acceptably, which varies from 3 to 5 mm day⁻¹ depending on meteorological conditions during the 39 days of the crop growing period. These results are used to validate the Penman-Monteith-Leuning Version 2 (PML-V2) scheme.