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A common intronic variant of PARP1 confers melanoma risk and mediates melanocyte growth via regulation of MITF.
Nature Genetics ( IF 30.8 ) Pub Date : 2017-07-31 , DOI: 10.1038/ng.3927
Jiyeon Choi 1 , Mai Xu 1 , Matthew M Makowski 2 , Tongwu Zhang 1 , Matthew H Law 3 , Michael A Kovacs 1 , Anton Granzhan 4 , Wendy J Kim 1 , Hemang Parikh 1, 5 , Michael Gartside 3 , Jeffrey M Trent 6 , Marie-Paule Teulade-Fichou 4 , Mark M Iles 7 , Julia A Newton-Bishop 7 , D Timothy Bishop 7 , Stuart MacGregor 3 , Nicholas K Hayward 3 , Michiel Vermeulen 2 , Kevin M Brown 1
Affiliation  

Previous genome-wide association studies have identified a melanoma-associated locus at 1q42.1 that encompasses a ∼100-kb region spanning the PARP1 gene. Expression quantitative trait locus (eQTL) analysis in multiple cell types of the melanocytic lineage consistently demonstrated that the 1q42.1 melanoma risk allele (rs3219090[G]) is correlated with higher PARP1 levels. In silico fine-mapping and functional validation identified a common intronic indel, rs144361550 (-/GGGCCC; r2 = 0.947 with rs3219090), as displaying allele-specific transcriptional activity. A proteomic screen identified RECQL as binding to rs144361550 in an allele-preferential manner. In human primary melanocytes, PARP1 promoted cell proliferation and rescued BRAFV600E-induced senescence phenotypes in a PARylation-independent manner. PARP1 also transformed TERT-immortalized melanocytes expressing BRAFV600E. PARP1-mediated senescence rescue was accompanied by transcriptional activation of the melanocyte-lineage survival oncogene MITF, highlighting a new role for PARP1 in melanomagenesis.

中文翻译:

PARP1的常见内含子变体赋予黑色素瘤风险,并通过调节MITF介导黑色素细胞的生长。

先前的全基因组关联研究已在1q42.1处发现了与黑色素瘤相关的基因座,该基因座涵盖了跨越PARP1基因的100 kb区域。在黑色素细胞谱系的多种细胞类型中的表达定量性状基因座(eQTL)分析一致表明,1q42.1黑色素瘤风险等位基因(rs3219090 [G])与更高的PARP1水平相关。在计算机上精细映射和功能验证确定了一个常见的内含子插入缺失rs144361550(-/ GGGCCC; r2 = 0.947,带有rs3219090),显示了等位基因特异性的转录活性。蛋白质组学筛选确定RECQL以等位基因优先方式与rs144361550结合。在人类原代黑素细胞中,PARP1以不依赖PARylation的方式促进细胞增殖并拯救BRAFV600E诱导的衰老表型。PARP1还转化了表达BRAFV600E的TERT永生黑色素细胞。PARP1介导的衰老抢救伴随着黑色素细胞谱系生存癌基因MITF的转录激活,突出了PARP1在黑色素瘤发生中的新作用。
更新日期:2017-08-31
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