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Genetic association study of exfoliation syndrome identifies a protective rare variant at LOXL1 and five new susceptibility loci
Nature Genetics ( IF 30.8 ) Pub Date : 2017-05-29 00:00:00 , DOI: 10.1038/ng.3875
Tin Aung , Mineo Ozaki , Mei Chin Lee , Ursula Schlötzer-Schrehardt , Gudmar Thorleifsson , Takanori Mizoguchi , Robert P Igo , Aravind Haripriya , Susan E Williams , Yury S Astakhov , Andrew C Orr , Kathryn P Burdon , Satoko Nakano , Kazuhiko Mori , Khaled Abu-Amero , Michael Hauser , Zheng Li , Gopalakrishnan Prakadeeswari , Jessica N Cooke Bailey , Alina Popa Cherecheanu , Jae H Kang , Sarah Nelson , Ken Hayashi , Shin-ichi Manabe , Shigeyasu Kazama , Tomasz Zarnowski , Kenji Inoue , Murat Irkec , Miguel Coca-Prados , Kazuhisa Sugiyama , Irma Järvelä , Patricio Schlottmann , S Fabian Lerner , Hasnaa Lamari , Yildirim Nilgün , Mukharram Bikbov , Ki Ho Park , Soon Cheol Cha , Kenji Yamashiro , Juan C Zenteno , Jost B Jonas , Rajesh S Kumar , Shamira A Perera , Anita S Y Chan , Nino Kobakhidze , Ronnie George , Lingam Vijaya , Tan Do , Deepak P Edward , Lourdes de Juan Marcos , Mohammad Pakravan , Sasan Moghimi , Ryuichi Ideta , Daniella Bach-Holm , Per Kappelgaard , Barbara Wirostko , Samuel Thomas , Daniel Gaston , Karen Bedard , Wenda L Greer , Zhenglin Yang , Xueyi Chen , Lulin Huang , Jinghong Sang , Hongyan Jia , Liyun Jia , Chunyan Qiao , Hui Zhang , Xuyang Liu , Bowen Zhao , Ya-Xing Wang , Liang Xu , Stéphanie Leruez , Pascal Reynier , George Chichua , Sergo Tabagari , Steffen Uebe , Matthias Zenkel , Daniel Berner , Georg Mossböck , Nicole Weisschuh , Ursula Hoja , Ulrich-Christoph Welge-Luessen , Christian Mardin , Panayiota Founti , Anthi Chatzikyriakidou , Theofanis Pappas , Eleftherios Anastasopoulos , Alexandros Lambropoulos , Arkasubhra Ghosh , Rohit Shetty , Natalia Porporato , Vijayan Saravanan , Rengaraj Venkatesh , Chandrashekaran Shivkumar , Narendran Kalpana , Sripriya Sarangapani , Mozhgan R Kanavi , Afsaneh Naderi Beni , Shahin Yazdani , Alireza lashay , Homa Naderifar , Nassim Khatibi , Antonio Fea , Carlo Lavia , Laura Dallorto , Teresa Rolle , Paolo Frezzotti , Daniela Paoli , Erika Salvi , Paolo Manunta , Yosai Mori , Kazunori Miyata , Tomomi Higashide , Etsuo Chihara , Satoshi Ishiko , Akitoshi Yoshida , Masahide Yanagi , Yoshiaki Kiuchi , Tsutomu Ohashi , Toshiya Sakurai , Takako Sugimoto , Hideki Chuman , Makoto Aihara , Masaru Inatani , Masahiro Miyake , Norimoto Gotoh , Fumihiko Matsuda , Nagahisa Yoshimura , Yoko Ikeda , Morio Ueno , Chie Sotozono , Jin Wook Jeoung , Min Sagong , Kyu Hyung Park , Jeeyun Ahn , Marisa Cruz-Aguilar , Sidi M Ezzouhairi , Abderrahman Rafei , Yaan Fun Chong , Xiao Yu Ng , Shuang Ru Goh , Yueming Chen , Victor H K Yong , Muhammad Imran Khan , Olusola O Olawoye , Adeyinka O Ashaye , Idakwo Ugbede , Adeola Onakoya , Nkiru Kizor-Akaraiwe , Chaiwat Teekhasaenee , Yanin Suwan , Wasu Supakontanasan , Suhanya Okeke , Nkechi J Uche , Ifeoma Asimadu , Humaira Ayub , Farah Akhtar , Ewa Kosior-Jarecka , Urszula Lukasik , Ignacio Lischinsky , Vania Castro , Rodolfo Perez Grossmann , Gordana Sunaric Megevand , Sylvain Roy , Edward Dervan , Eoin Silke , Aparna Rao , Priti Sahay , Pablo Fornero , Osvaldo Cuello , Delia Sivori , Tamara Zompa , Richard A Mills , Emmanuelle Souzeau , Paul Mitchell , Jie Jin Wang , Alex W Hewitt , Michael Coote , Jonathan G Crowston , Sergei Y Astakhov , Eugeny L Akopov , Anton Emelyanov , Vera Vysochinskaya , Gyulli Kazakbaeva , Rinat Fayzrakhmanov , Saleh A Al-Obeidan , Ohoud Owaidhah , Leyla Ali Aljasim , Balram Chowbay , Jia Nee Foo , Raphael Q Soh , Kar Seng Sim , Zhicheng Xie , Augustine W O Cheong , Shi Qi Mok , Hui Meng Soo , Xiao Yin Chen , Su Qin Peh , Khai Koon Heng , Rahat Husain , Su-Ling Ho , Axel M Hillmer , Ching-Yu Cheng , Francisco A Escudero-Domínguez , Rogelio González-Sarmiento , Frederico Martinon-Torres , Antonio Salas , Kessara Pathanapitoon , Linda Hansapinyo , Boonsong Wanichwecharugruang , Naris Kitnarong , Anavaj Sakuntabhai , Hip X Nguyn , Giang T T Nguyn , Trình V Nguyn , Werner Zenz , Alexander Binder , Daniela S Klobassa , Martin L Hibberd , Sonia Davila , Stefan Herms , Markus M Nöthen , Susanne Moebus , Robyn M Rautenbach , Ari Ziskind , Trevor R Carmichael , Michele Ramsay , Lydia Álvarez , Montserrat García , Héctor González-Iglesias , Pedro P Rodríguez-Calvo , Luis Fernández-Vega Cueto , Çilingir Oguz , Nevbahar Tamcelik , Eray Atalay , Bilge Batu , Dilek Aktas , Burcu Kasım , M Roy Wilson , Anne L Coleman , Yutao Liu , Pratap Challa , Leon Herndon , Rachel W Kuchtey , John Kuchtey , Karen Curtin , Craig J Chaya , Alan Crandall , Linda M Zangwill , Tien Yin Wong , Masakazu Nakano , Shigeru Kinoshita , Anneke I den Hollander , Eija Vesti , John H Fingert , Richard K Lee , Arthur J Sit , Bradford J Shingleton , Ningli Wang , Daniele Cusi , Raheel Qamar , Peter Kraft , Margaret A Pericak-Vance , Soumya Raychaudhuri , Steffen Heegaard , Tero Kivelä , André Reis , Friedrich E Kruse , Robert N Weinreb , Louis R Pasquale , Jonathan L Haines , Unnur Thorsteinsdottir , Fridbert Jonasson , R Rand Allingham , Dan Milea , Robert Ritch , Toshiaki Kubota , Kei Tashiro , Eranga N Vithana , Shazia Micheal , Fotis Topouzis , Jamie E Craig , Michael Dubina , Periasamy Sundaresan , Kari Stefansson , Janey L Wiggs , Francesca Pasutto , Chiea Chuen Khor

Exfoliation syndrome (XFS) is the most common known risk factor for secondary glaucoma and a major cause of blindness worldwide. Variants in two genes, LOXL1 and CACNA1A, have previously been associated with XFS. To further elucidate the genetic basis of XFS, we collected a global sample of XFS cases to refine the association at LOXL1, which previously showed inconsistent results across populations, and to identify new variants associated with XFS. We identified a rare protective allele at LOXL1 (p.Phe407, odds ratio (OR) = 25, P = 2.9 × 10−14) through deep resequencing of XFS cases and controls from nine countries. A genome-wide association study (GWAS) of XFS cases and controls from 24 countries followed by replication in 18 countries identified seven genome-wide significant loci (P < 5 × 10−8). We identified association signals at 13q12 (POMP), 11q23.3 (TMEM136), 6p21 (AGPAT1), 3p24 (RBMS3) and 5q23 (near SEMA6A). These findings provide biological insights into the pathology of XFS and highlight a potential role for naturally occurring rare LOXL1 variants in disease biology.

中文翻译:

剥脱综合征的遗传关联研究确定了LOXL1和5个新的易感基因座的保护性稀有变异

剥脱综合征(XFS)是继发性青光眼最常见的已知危险因素,也是全世界失明的主要原因。以前已经将XXLLOXL1CACNA1A这两个基因的变体相关联。为了进一步阐明XFS的遗传基础,我们收集了XFS病例的全球样本以完善LOXL1的关联,该关联以前在整个人群中显示出不一致的结果,并确定了与XFS相关的新变体。我们在LOXL1处鉴定了罕见的保护性等位基因(p.Phe407,比值比(OR)= 25,P = 2.9×10 -14),通过对9个国家/地区的XFS案件和控件进行深入的重新排序。来自24个国家/地区的XFS病例和对照的全基因组关联研究(GWAS),然后在18个国家中进行复制,确定了七个全基因组重要位点(P <5×10 -8)。我们在13q12(POMP),11q23.3TMEM136),6p21(AGPAT1),3p24(RBMS3)和5q23(靠近SEMA6A)处识别了关联信号。这些发现为XFS的病理学提供了生物学见解,并突出了天然存在的罕见LOXL1变体在疾病生物学中的潜在作用。
更新日期:2017-06-29
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